annotate validate_temperature_data.py @ 0:26415eac98c3 draft default tip

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author greg
date Tue, 27 Nov 2018 11:08:20 -0500
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1 #!/usr/bin/env python
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2 import argparse
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3 import datetime
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4 import decimal
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5 import re
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6 import shutil
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7 import sys
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8
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9 parser = argparse.ArgumentParser()
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10 parser.add_argument('--data_type', dest='data_type', default=None, help='Temperature data type, normals or actuals')
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11 parser.add_argument('--input_actuals', dest='input_actuals', default=None, help='Daily actuals temperature data')
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12 parser.add_argument('--input_normals', dest='input_normals', default=None, help='30 year normals temperature data')
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13 parser.add_argument('--output', dest='output', help='Output dataset'),
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14 args = parser.parse_args()
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15
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16 ACTUALS_HEADER = "LATITUDE,LONGITUDE,DATE,DOY,TMIN,TMAX"
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17 NORMALS_HEADER = "stationid,latitude,longitude,elev_m,name,st,mmdd,doy,tmin,tmax"
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18
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19 def add_error_msg(accumulated_msgs, msg):
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20 return "%s\n%s" % (accumulated_msgs, msg)
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21
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22
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23 def empty_value(line_no, label, accumulated_msgs):
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24 return add_error_msg(accumulated_msgs, "The required %s value is missing on line %d." % (label, line_no))
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25
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26
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27 def stop_error(msg):
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28 sys.exit(msg)
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29
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30
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31 def validate_date_string(line_no, date_string, accumulated_msgs):
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32 try:
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33 datetime.datetime.strptime(date_string, '%Y-%m-%d')
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34 return accumulated_msgs
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35 except ValueError:
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36 return add_error_msg(accumulated_msgs, "Line %d contains an incorrect date format (%s must be YYYY-MM-DD)." % (line_no, date_string))
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37
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38
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39 def validate_decimal(line_no, decimal_string, accumulated_msgs, label):
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40 try:
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41 decimal.Decimal(decimal_string)
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42 return accumulated_msgs
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43 except Exception:
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44 return add_error_msg(accumulated_msgs, "Line %d contains an incorrect %s decimal value (%s)." % (line_no, label, decimal_string))
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45
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46
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47 def validate_integer(line_no, integer_string, accumulated_msgs, label):
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48 if integer_string.isdigit():
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49 return accumulated_msgs
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50 return add_error_msg(accumulated_msgs, "Line %d contains an incorrect %s integer value (%s)." % (line_no, label, integer_string))
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51
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52
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53 def validate_mmdd(line_no, mmdd, accumulated_msgs):
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54 try:
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55 datetime.datetime.strptime(mmdd, '%m-%d')
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56 return accumulated_msgs
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57 except ValueError:
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58 # Handle Feb 29.
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59 items = mmdd.split("-")
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60 try:
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61 month = int(items[0])
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62 day = int(items[1])
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63 if month == 2 and day == 29:
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64 return accumulated_msgs
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65 except Exception:
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66 # Error message accumulated below.
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67 pass
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68 return add_error_msg(accumulated_msgs, "Line %d contains an incorrect date format (%s must be mm-dd)." % (line_no, mmdd))
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69
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70
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71 accumulated_msgs = ""
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72 last_doy = 0
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73 # Parse the input file, skipping the header, and validating
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74 # that each data line consists of 31 comma-separated items.
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75 if args.data_type == "normals":
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76 input_file = args.input_normals
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77 num_normals_rows = 0
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78 else:
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79 input_file = args.input_actuals
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80 with open(input_file, "r") as ih:
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81 for i, line in enumerate(ih):
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82 line = line.rstrip("\r\n")
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83 items = line.split(",")
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84 if args.data_type == "normals":
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85 num_normals_rows += 1
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86 if i == 0:
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87 if line != NORMALS_HEADER:
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88 accumulated_msgs = add_error_msg(accumulated_msgs, "The header is invalid, must be %s" % NORMALS_HEADER)
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89 continue
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90 if i > 367:
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91 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 367 lines (must be 1 header line and 366 data lines).")
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92 stop_error(accumulated_msgs)
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93 if len(items) != 10:
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94 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 10)." % (i, len(items)))
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95 stop_error(accumulated_msgs)
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96 stationid = items[0].strip()
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97 if len(stationid) == 0:
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98 accumulated_msgs = empty_value(i, "stationid", accumulated_msgs)
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99 latitude = items[1].strip()
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100 accumulated_msgs = validate_decimal(i, latitude, accumulated_msgs, "latitude")
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101 longitude = items[2].strip()
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102 accumulated_msgs = validate_decimal(i, longitude, accumulated_msgs, "longitude")
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103 elev_m = items[3].strip()
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104 accumulated_msgs = validate_decimal(i, elev_m, accumulated_msgs, "elev_m")
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105 name = items[4].strip()
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106 if len(name) == 0:
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107 accumulated_msgs = empty_value(i, "name", accumulated_msgs)
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108 st = items[5].strip()
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109 if len(st) == 0:
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110 accumulated_msgs = empty_value(i, "st", accumulated_msgs)
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111 mmdd = items[6].strip()
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112 accumulated_msgs = validate_mmdd(i, mmdd, accumulated_msgs)
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113 doy = items[7].strip()
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114 accumulated_msgs = validate_integer(i, doy, accumulated_msgs, "doy")
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115 # Make sure the DOY values are consecutive.
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116 try:
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117 if int(doy) != (last_doy + 1):
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118 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains a DOY (%s) that is not conexcutive (previous DOY is %d)." % (i, doy, last_doy))
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119 stop_error(accumulated_msgs)
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120 else:
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121 last_doy += 1
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122 except Exception:
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123 # The error for an invalid integer was captured above.
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124 pass
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125 tmin = items[8].strip()
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126 accumulated_msgs = validate_decimal(i, tmin, accumulated_msgs, "tmin")
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127 tmax = items[9].strip()
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128 accumulated_msgs = validate_decimal(i, tmax, accumulated_msgs, "tmax")
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129 else:
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130 if i == 0:
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131 if line != ACTUALS_HEADER:
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132 accumulated_msgs = add_error_msg(accumulated_msgs, "The header is invalid, must be %s" % ACTUALS_HEADER)
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133 continue
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134 if i > 367:
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135 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 367 lines (must be 1 header line and no more than 366 data lines).")
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136 stop_error(accumulated_msgs)
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137 if len(items) != 6:
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138 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 6)." % (i, len(items)))
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139 stop_error(accumulated_msgs)
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140 latitude = items[0].strip()
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141 accumulated_msgs = validate_decimal(i, latitude, accumulated_msgs, "LATITUDE")
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142 longitude = items[1].strip()
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143 accumulated_msgs = validate_decimal(i, longitude, accumulated_msgs, "LONGITUDE")
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144 date_string = items[2].strip()
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145 accumulated_msgs = validate_date_string(i, date_string, accumulated_msgs)
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146 doy = items[3].strip()
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147 accumulated_msgs = validate_integer(i, doy, accumulated_msgs, "doy")
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148 # Make sure the DOY values are consecutive.
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149 if i == 1:
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150 last_doy = int(doy)
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151 else:
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152 try:
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153 if int(doy) != (last_doy + 1):
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154 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains a DOY (%s) that is not conexcutive (previous DOY is %d)." % (i, doy, last_doy))
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155 stop_error(accumulated_msgs)
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156 else:
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157 last_doy += 1
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158 except Exception:
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159 # The error for an invalid integer was captured above.
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160 pass
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161 tmin = items[4].strip()
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162 accumulated_msgs = validate_decimal(i, tmin, accumulated_msgs, "tmin")
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163 tmax = items[5].strip()
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164 accumulated_msgs = validate_decimal(i, tmax, accumulated_msgs, "tmax")
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165 if args.data_type == "normals" and num_normals_rows != 367:
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166 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains %d rows, (must be 367)." % num_normals_rows)
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167
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168 if len(accumulated_msgs) > 0:
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169 stop_error(accumulated_msgs)
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170
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171 shutil.copyfile(input_file, args.output)