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annotate dbkit_extract.xml @ 4:58de7c3926cc draft

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"planemo upload commit c6112b37070456c582e915244105c4c63f4cebdb"
author guerler
date Mon, 25 Jan 2021 04:23:15 +0000
parents 81c7d4668a7e
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1 <tool id="dbkit_extract" name="DBKit Extract" version="0.1.1" python_template_version="3.5" license="MIT">
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2 <description>entries</description>
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3 <command detect_errors="exit_code"><![CDATA[
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4 python3 '$__tool_directory__/dbkit_extract.py' -l '$list' -d '$database' -i '$index' -oi '$outindex' -od '$outdata' -g '$logfile'
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5 ]]></command>
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6 <inputs>
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7 <param format="tabular" name="list" type="data" label="List of entries" help="Select a tabular file containing the entries to be extracted."/>
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8 <param format="ffindex" name="index" type="data" label="Database Index" help="Select the index file of the database (ffindex)."/>
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9 <param format="ffdata" name="database" type="data" label="Database Content" help="Select the data file of the database (ffdata)."/>
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10 </inputs>
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11 <outputs>
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12 <data format="ffindex" name="outindex" label="DBKit Extracted Index" />
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13 <data format="ffdata" name="outdata" label="DBKit Extraced Database" />
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14 <data format="txt" name="logfile" label="DBKit Extraced Log" />
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15 </outputs>
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16 <tests>
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17 <test>
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18 <param name="list" value="create/pdb.tabular" />
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19 <param name="index" value="merge/result.ffindex" />
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20 <param name="database" value="merge/result.ffdata" />
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21 <output name="outindex" file="merge/second.ffindex" />
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22 <output name="outdatabase" file="merge/second.ffdata" />
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23 </test>
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24 </tests>
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25 <help><![CDATA[
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26 This database creation tool merges two pairs of ffindex/ffdata entries into a single ffindex/ffdata pair.
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27 ]]></help>
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28 </tool>