Mercurial > repos > guerler > dbkit

annotate dbkit_extract.xml @ 2:81c7d4668a7e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
author guerler
date Wed, 16 Dec 2020 12:02:48 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
1 <tool id="dbkit_extract" name="DBKit Extract" version="0.1.1" python_template_version="3.5" license="MIT">
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
2 <description>entries</description>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
3 <command detect_errors="exit_code"><![CDATA[
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
4 python3 '$__tool_directory__/dbkit_extract.py' -l '$list' -d '$database' -i '$index' -oi '$outindex' -od '$outdata' -g '$logfile'
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
5 ]]></command>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
6 <inputs>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
7 <param format="tabular" name="list" type="data" label="List of entries" help="Select a tabular file containing the entries to be extracted."/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
8 <param format="ffindex" name="index" type="data" label="Database Index" help="Select the index file of the database (ffindex)."/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
9 <param format="ffdata" name="database" type="data" label="Database Content" help="Select the data file of the database (ffdata)."/>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
10 </inputs>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
11 <outputs>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
12 <data format="ffindex" name="outindex" label="DBKit Extracted Index" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
13 <data format="ffdata" name="outdata" label="DBKit Extraced Database" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
14 <data format="txt" name="logfile" label="DBKit Extraced Log" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
15 </outputs>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
16 <tests>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
17 <test>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
18 <param name="list" value="create/pdb.tabular" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
19 <param name="index" value="merge/result.ffindex" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
20 <param name="database" value="merge/result.ffdata" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
21 <output name="outindex" file="merge/second.ffindex" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
22 <output name="outdatabase" file="merge/second.ffdata" />
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
23 </test>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
24 </tests>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
25 <help><![CDATA[
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
26 This database creation tool merges two pairs of ffindex/ffdata entries into a single ffindex/ffdata pair.
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
27 ]]></help>
81c7d4668a7e "planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
guerler
parents:
diff changeset
28 </tool>