Mercurial > repos > guerler > dbkit
comparison dbkit_extract.xml @ 2:81c7d4668a7e draft
"planemo upload commit bd03b7888eab0b010acfc3affd38bf4d4e2bb1ef-dirty"
| author | guerler |
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| date | Wed, 16 Dec 2020 12:02:48 +0000 |
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| 1:987e55ea29b8 | 2:81c7d4668a7e |
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| 1 <tool id="dbkit_extract" name="DBKit Extract" version="0.1.1" python_template_version="3.5" license="MIT"> | |
| 2 <description>entries</description> | |
| 3 <command detect_errors="exit_code"><![CDATA[ | |
| 4 python3 '$__tool_directory__/dbkit_extract.py' -l '$list' -d '$database' -i '$index' -oi '$outindex' -od '$outdata' -g '$logfile' | |
| 5 ]]></command> | |
| 6 <inputs> | |
| 7 <param format="tabular" name="list" type="data" label="List of entries" help="Select a tabular file containing the entries to be extracted."/> | |
| 8 <param format="ffindex" name="index" type="data" label="Database Index" help="Select the index file of the database (ffindex)."/> | |
| 9 <param format="ffdata" name="database" type="data" label="Database Content" help="Select the data file of the database (ffdata)."/> | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 <data format="ffindex" name="outindex" label="DBKit Extracted Index" /> | |
| 13 <data format="ffdata" name="outdata" label="DBKit Extraced Database" /> | |
| 14 <data format="txt" name="logfile" label="DBKit Extraced Log" /> | |
| 15 </outputs> | |
| 16 <tests> | |
| 17 <test> | |
| 18 <param name="list" value="create/pdb.tabular" /> | |
| 19 <param name="index" value="merge/result.ffindex" /> | |
| 20 <param name="database" value="merge/result.ffdata" /> | |
| 21 <output name="outindex" file="merge/second.ffindex" /> | |
| 22 <output name="outdatabase" file="merge/second.ffdata" /> | |
| 23 </test> | |
| 24 </tests> | |
| 25 <help><![CDATA[ | |
| 26 This database creation tool merges two pairs of ffindex/ffdata entries into a single ffindex/ffdata pair. | |
| 27 ]]></help> | |
| 28 </tool> |