Mercurial > repos > guerler > ffindex_dbkit_extract

annotate dbkit_extract.xml @ 1:1d9fcf2157e0 draft

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"planemo upload commit aa6c4b1d15a2d5361d68c7eb313551bddf2700fa"
author guerler
date Mon, 29 Mar 2021 21:46:19 +0000
parents ad4b7db26523
children 4def47766a3c
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1 <tool id="ffindex_dbkit_extract" name="DBKit Extract" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="MIT" profile="20.01">
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2 <description>entries</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <command detect_errors="exit_code"><![CDATA[
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8 dbkit_extract.py
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9 -l '$list'
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10 @db_source@
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11 -oi '$outindex'
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12 -od '$outdata'
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13 -g '$logfile'
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14 ]]> </command>
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15 <inputs>
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16 <param name="list" type="data" format="tabular" label="List of entries" help="Select a tabular file containing the entries to be extracted." />
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17 <expand macro="db_source" />
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18 <expand macro="logfile" />
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19 </inputs>
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20 <outputs>
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21 <data format="ffindex" name="outindex" label="DBKit Extracted Index" />
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22 <data format="ffdata" name="outdata" label="DBKit Extraced Database" />
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23 <data format="txt" name="logfile" label="DBKit Extraced Log">
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24 <filter>logfile</filter>
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25 </data>
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26 </outputs>
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27 <tests>
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28 <test>
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29 <param name="list" value="create/pdb.tabular" />
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30 <conditional name="db_source">
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31 <param name="db_source_selector" value="history" />
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32 <param name="ffindex" value="merge/result.ffindex" />
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33 <param name="ffdata" value="merge/result.ffdata" />
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34 </conditional>
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35 <output name="outindex" file="merge/second.ffindex" />
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36 <output name="outdata" file="merge/second.ffdata" />
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37 </test>
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38 <test>
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39 <param name="list" value="create/pdb.tabular" />
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40 <conditional name="db_source">
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41 <param name="db_source_selector" value="indexed" />
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42 <param name="ffindex" value="merge" />
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43 </conditional>
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44 <output name="outindex" file="merge/second.ffindex" />
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45 <output name="outdata" file="merge/second.ffdata" />
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46 </test>
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47 </tests>
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48 <help><![CDATA[
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49
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50 **What it does**
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51
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52 This database creation tool merges two pairs of ffindex/ffdata entries into a single ffindex/ffdata pair.
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53 ]]> </help>
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54 <expand macro="citations" />
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55 </tool>