Mercurial > repos > guerler > ffindex_dbkit_extract

annotate macros.xml @ 2:953f0fd655c0 draft

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"planemo upload commit 2a0fc8275bfbb76a828082424d346bbe0fd40914"
author guerler
date Thu, 01 Apr 2021 19:36:20 +0000
parents 1d9fcf2157e0
children
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1 <macros>
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2 <xml name="requirements">
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3 <requirements>
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4 <requirement type="package" version="@TOOL_VERSION@">ffindex-dbkit</requirement>
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5 <yield />
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6 </requirements>
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7 </xml>
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8 <token name="@TOOL_VERSION@">0.2</token>
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9 <token name="@VERSION_SUFFIX@">0</token>
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10 <xml name="ffindex_single_inputs">
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11 <param name="ffdata" type="data" format="ffdata" label="Database" help="Database Data file." />
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12 <param name="ffindex" type="data" format="ffindex" label="Database Index" help="Database Index file." />
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13 </xml>
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14
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15 <xml name="citations">
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16 <citations>
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17 <!--citation type="doi">10.1021/ci300579r</citation-->
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18 </citations>
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19 </xml>
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20 <xml name="logfile">
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21 <param name="logfile" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Output log file" />
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22 </xml>
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23
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24 <xml name="db_source">
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25 <conditional name="db_source">
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26 <param name="db_source_selector" type="select" label="Custom or built-in ffindex" help="Built-ins have been indexed using ffindex">
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27 <option value="indexed" selected="true">Use a built-in index</option>
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28 <option value="history">Use a ffindex from history</option>
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29 </param>
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30 <when value="indexed">
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31 <param name="ffindex" type="select" label="Select ffindex" help="">
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32 <options from_data_table="ffindex_indices">
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33 <filter type="sort_by" column="0" />
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34 <validator type="no_options" message="No indices are available" />
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35 </options>
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36 </param>
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37 </when>
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38 <when value="history">
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39 <expand macro="ffindex_single_inputs" />
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40 </when>
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41 </conditional>
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42 </xml>
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43 <xml name="db_source2">
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44 <conditional name="db_source2">
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45 <param name="db_source_selector" type="select" label="Custom or built-in ffindex" help="Built-ins have been indexed using ffindex">
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46 <option value="indexed" selected="true">Use a built-in index</option>
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47 <option value="history">Use a ffindex from history</option>
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48 </param>
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49 <when value="indexed">
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50 <param name="ffindex" type="select" label="Select ffindex" help="">
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51 <options from_data_table="ffindex_indices">
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52 <filter type="sort_by" column="0" />
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53 <validator type="no_options" message="No indices are available" />
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54 </options>
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55 </param>
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56 </when>
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57 <when value="history">
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58 <expand macro="ffindex_single_inputs" />
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59 </when>
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60 </conditional>
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61 </xml>
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62
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63 <token name="@db_source@">
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64 #if $db_source.db_source_selector == 'indexed':
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65 -d '${db_source.ffindex.fields.path}.ffdata'
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66 -i '${db_source.ffindex.fields.path}.ffindex'
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67 #else
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68 -d '$db_source.ffdata'
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69 -i '$db_source.ffindex'
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70 #end if
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71 </token>
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72 <token name="@db_source2@">
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73 #if $db_source.db_source_selector == 'indexed':
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74 -sd '${db_source2.ffindex.fields.path}.ffdata'
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75 -si '${db_source2.ffindex.fields.path}.ffindex'
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76 #else
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77 -sd '$db_source2.ffdata'
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78 -si '$db_source2.ffindex'
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79 #end if
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80 </token>
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81 </macros>