Mercurial > repos > guerler > ffindex_dbkit_merge

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"planemo upload commit fe7295ad48151648562b06d5b075a68d77747326"
author guerler
date Thu, 08 Apr 2021 18:19:29 +0000
parents 34214e1c16e8
children
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1 <tool id="ffindex_dbkit_merge" name="DBKit Merge" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" license="MIT" profile="20.01">
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2 <description>two databases</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <command detect_errors="exit_code"><![CDATA[
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8 dbkit_merge.py
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9 @db_source@
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10 @db_source2@
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11 -oi '$outindex'
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12 -od '$outdata'
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13 -log '$logfile'
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14 ]]> </command>
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15 <inputs>
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16 <expand macro="db_source" />
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17 <expand macro="db_source2" />
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18 <expand macro="logfile" />
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19 </inputs>
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20 <outputs>
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21 <data name="outindex" format="ffindex" label="DBKit Merged Index" />
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22 <data name="outdata" format="ffdata" label="DBKit Merged Database" />
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23 <data format="txt" name="logfile" label="DBKit Merged Log">
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24 <filter>logfile</filter>
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25 </data>
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26 </outputs>
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27 <tests>
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28 <test>
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29 <conditional name="db_source">
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30 <param name="db_source_selector" value="history" />
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31 <param name="ffindex" value="create/first.ffindex" />
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32 <param name="ffdata" value="create/first.ffdata" />
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33 </conditional>
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34 <conditional name="db_source2">
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35 <param name="db_source_selector" value="history" />
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36 <param name="ffindex" value="merge/second.ffindex" />
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37 <param name="ffdata" value="merge/second.ffdata" />
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38 </conditional>
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39 <output name="outindex" file="merge/result.ffindex" />
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40 <output name="outdata" file="merge/result.ffdata" />
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41 </test>
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42 <test>
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43 <conditional name="db_source">
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44 <param name="db_source_selector" value="indexed" />
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45 <param name="ffindex" value="first" />
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46 </conditional>
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47 <conditional name="db_source2">
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48 <param name="db_source_selector" value="indexed" />
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49 <param name="ffindex" value="second" />
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50 </conditional>
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51 <output name="outindex" file="merge/result.ffindex" />
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52 <output name="outdata" file="merge/result.ffdata" />
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53 </test>
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54 </tests>
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55 <help><![CDATA[
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56
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57 **What it does**
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58
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59 This database creation tool merges two pairs of ffindex/ffdata entries into a single ffindex/ffdata pair.
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60
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61 ]]> </help>
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62 <expand macro="citations" />
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63 </tool>