Mercurial > repos > guerler > ffindex_dbkit_merge
comparison dbkit_merge.xml @ 0:372a29b9fe4b draft
"planemo upload commit b68cb41b1884703c4f1574b65a6408d7d0cca321"
| author | guerler |
|---|---|
| date | Tue, 23 Mar 2021 23:07:22 +0000 |
| parents | |
| children | 5b97150fe325 |
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| -1:000000000000 | 0:372a29b9fe4b |
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| 1 <tool id="ffindex_dbkit_merge" name="DBKit Merge" version="0.1.1" license="MIT" profile="20.01"> | |
| 2 <description>two databases</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 dbkit_merge.py | |
| 9 @db_source@ | |
| 10 @db_source2@ | |
| 11 -oi '$outindex' | |
| 12 -od '$outdata' | |
| 13 -log '$logfile' | |
| 14 ]]> </command> | |
| 15 <inputs> | |
| 16 <expand macro="db_source" /> | |
| 17 <expand macro="db_source2" /> | |
| 18 <expand macro="logfile" /> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <data name="outindex" format="ffindex" label="DBKit Merged Index" /> | |
| 22 <data name="outdata" format="ffdata" label="DBKit Merged Database" /> | |
| 23 <data format="txt" name="logfile" label="DBKit Merged Log"> | |
| 24 <filter>logfile</filter> | |
| 25 </data> | |
| 26 </outputs> | |
| 27 <tests> | |
| 28 <test> | |
| 29 <conditional name="db_source"> | |
| 30 <param name="db_source_selector" value="history" /> | |
| 31 <param name="ffindex" value="create/first.ffindex" /> | |
| 32 <param name="ffdata" value="create/first.ffdata" /> | |
| 33 </conditional> | |
| 34 <conditional name="db_source"> | |
| 35 <param name="db_source_selector" value="history" /> | |
| 36 <param name="ffindex" value="merge/second.ffindex" /> | |
| 37 <param name="ffdata" value="merge/second.ffdata" /> | |
| 38 </conditional> | |
| 39 <output name="outindex" file="merge/result.ffindex" /> | |
| 40 <output name="outdata" file="merge/result.ffdata" /> | |
| 41 </test> | |
| 42 <test> | |
| 43 <conditional name="db_source"> | |
| 44 <param name="db_source_selector" value="indexed" /> | |
| 45 <param name="ffindex" value="first" /> | |
| 46 </conditional> | |
| 47 <conditional name="db_source"> | |
| 48 <param name="db_source_selector" value="indexed" /> | |
| 49 <param name="ffindex" value="second" /> | |
| 50 </conditional> | |
| 51 <output name="outindex" file="merge/result.ffindex" /> | |
| 52 <output name="outdata" file="merge/result.ffdata" /> | |
| 53 </test> | |
| 54 </tests> | |
| 55 <help><![CDATA[ | |
| 56 | |
| 57 **What it does** | |
| 58 | |
| 59 This database creation tool merges two pairs of ffindex/ffdata entries into a single ffindex/ffdata pair. | |
| 60 | |
| 61 ]]> </help> | |
| 62 <expand macro="citations" /> | |
| 63 </tool> |