Mercurial > repos > guerler > hhsearch
annotate test-data/6VYB_A.hhr @ 1:589e4d51bda4 draft default tip
"planemo upload commit effb42c69f6612d227ad29597d16b659e848ef82"
author | guerler |
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date | Tue, 23 Mar 2021 23:17:33 +0000 |
parents | 0dd6880ff950 |
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0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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1 Query 6VYB_A |
0dd6880ff950
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2 Match_columns 966 |
0dd6880ff950
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3 No_of_seqs 1 out of 1 |
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4 Neff 1 |
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5 Searched_HMMs 100 |
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6 Date Sun Jul 26 21:21:46 2020 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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7 Command hhblits -i test-data/query.fasta -o query.hhr -d test-data/dbCAN-fam-V8/dbCAN-fam-V8 |
0dd6880ff950
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8 |
0dd6880ff950
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9 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM |
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10 1 ABN54336.1|CE12|183-378|9.5e-5 17.2 1.1 0.0014 32.1 0.0 13 586-598 1-13 (210) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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11 2 ANU56961.1|PL12_2.hmm|1.8e-61| 3.4 9.9 0.013 24.9 0.0 32 900-931 38-69 (131) |
0dd6880ff950
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12 3 CAX58257.1|CE11|4-276|4.9e-122 2.1 18 0.023 25.0 0.0 38 857-894 6-54 (277) |
0dd6880ff950
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13 4 APK54672.1|GT103 2.1 18 0.023 24.9 0.0 168 629-825 1-184 (232) |
0dd6880ff950
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14 5 AAD04130.1|GT13|24-440|6.3e-18 1.7 23 0.03 25.6 0.0 47 302-349 156-203 (390) |
0dd6880ff950
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15 6 ACR10769.1|PL1|79-276|1.4e-54 1.3 33 0.041 21.6 0.0 53 59-111 59-115 (196) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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16 7 AAR43340.1|GT19|17-374|6.8e-14 1.3 33 0.041 23.4 0.0 14 254-267 116-129 (357) |
0dd6880ff950
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17 8 BAD47100.1|GH125|74-473|3.2e-1 1.3 32 0.041 24.6 0.0 41 98-138 291-338 (402) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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18 9 ACY95489.1|CBM14|33-88|9.4e-16 1.1 38 0.047 18.2 0.0 36 238-277 39-74 (81) |
0dd6880ff950
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19 10 AAK92730.1|PL1_1.hmm|3.6e-111| 0.9 49 0.063 21.4 0.0 50 277-326 18-67 (199) |
0dd6880ff950
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20 |
0dd6880ff950
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21 No 1 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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22 >ABN54336.1|CE12|183-378|9.5e-54 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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23 Probab=17.23 E-value=1.1 Score=32.05 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=11.0 Template_Neff=5.400 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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24 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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25 Q 6VYB_A 586 TMYICGDSTECSN 598 (966) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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26 Q Consensus 586 tmyicgdstecsn 598 (966) |
0dd6880ff950
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27 |+|||||||-|.. |
0dd6880ff950
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28 T Consensus 1 tI~l~GDSTva~~ 13 (210) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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29 T ABN54336.1|CE1 1 TIFLAGDSTVANY 13 (210) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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30 Confidence 6899999998853 |
0dd6880ff950
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31 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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32 |
0dd6880ff950
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33 No 2 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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34 >ANU56961.1|PL12_2.hmm|1.8e-61|404-534 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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35 Probab=3.41 E-value=9.9 Score=24.92 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=26.7 Template_Neff=2.600 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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36 |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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37 Q 6VYB_A 900 ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEP 931 (966) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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38 Q Consensus 900 ichdgkahfpregvfvsngthwfvtqrnfyep 931 (966) |
0dd6880ff950
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39 .-++|+-.||..|.||-.|..--..+|+.|.. |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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40 T Consensus 38 Lw~~GRnf~PDaG~yvY~Gd~~~~~~R~wfR~ 69 (131) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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41 T ANU56961.1|PL1 38 LWVKGRNFFPDAGSYVYAGDSEINKLRNWFRQ 69 (131) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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42 Confidence 56899999999999999998866777777753 |
0dd6880ff950
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43 |
0dd6880ff950
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44 |
0dd6880ff950
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45 No 3 |
0dd6880ff950
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46 >CAX58257.1|CE11|4-276|4.9e-122 |
0dd6880ff950
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47 Probab=2.10 E-value=18 Score=25.00 Aligned_cols=38 Identities=32% Similarity=0.532 Sum_probs=26.5 Template_Neff=4.700 |
0dd6880ff950
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48 |
0dd6880ff950
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49 Q 6VYB_A 857 KRVDFCGKGYHL------MSFPQSAPHGVVFLHVT-----YVPAQEKNF 894 (966) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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50 Q Consensus 857 krvdfcgkgyhl------msfpqsaphgvvflhvt-----yvpaqeknf 894 (966) |
0dd6880ff950
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51 +.|.+.|.|.|- --.|..+.+|++|..+- .+||.-.+. |
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52 T Consensus 6 ~~v~~~GiGLHsG~~v~l~l~PA~~~tGIvF~R~dl~~~~~IpA~~~~V 54 (277) |
0dd6880ff950
"planemo upload commit 2ce78baac81e5fc7df43ca3ec81a3c51fdb98003"
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53 T CAX58257.1|CE1 6 RSVSLTGVGLHSGKKVTLTLRPAPANTGIVFRRTDLDGPPEIPADADNV 54 (277) |
0dd6880ff950
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54 Confidence 456778888773 44688888999998875 555554443 |
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55 |
0dd6880ff950
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56 |
0dd6880ff950
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57 No 4 |
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58 >APK54672.1|GT103 |
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59 Probab=2.06 E-value=18 Score=24.88 Aligned_cols=168 Identities=24% Similarity=0.353 Sum_probs=95.1 Template_Neff=2.800 |
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60 |
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61 Q 6VYB_A 629 FAQVKQIYKTPPIKDFGGFNFSQILPDPSKSKRSFIEDLLFNKVTFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFG 708 (966) |
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62 Q Consensus 629 faqvkqiyktppikdfggfnfsqilpdpskskrsfiedllfnkvtfngltvlpplltdemiaqytsallagtitsgwtfg 708 (966) |
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63 |.|-|.|+.-+.+.+-..--+.--||..-..++.|-.+.-.+---|.||-- ..||. |
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64 T Consensus 1 ~~~~~~~~s~~~~~~~d~~~i~LsLPET~~RR~~f~~~~~~G~q~FdGlR~----------------------~~GWI-- 56 (232) |
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65 T APK54672.1|GT1 1 FSQYKSIFSQCEISPQDVDFICLSLPETIERRRDFEQDNPYGIQLFDGLRH----------------------RPGWI-- 56 (232) |
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66 Confidence 456667776666666555445555777666666666555544444555432 34663 |
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67 |
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68 |
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69 Q 6VYB_A 709 AGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTAS------AL-------GKLQDVVNQNA 775 (966) |
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70 Q Consensus 709 agaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstas------al-------gklqdvvnqna 775 (966) |
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71 |+++..-+..+-|- --+..+-.+-|..-+....|.+.+..+++-|...-+ .| -|+..|-.... |
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72 T Consensus 57 -GCglSyk~l~r~al---~~~~~~lti~EDDV~fp~df~~~~~~v~~yL~~~~~~WDvFsGliAdlH~dtkIl~ve~~~g 132 (232) |
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73 T APK54672.1|GT1 57 -GCGLSYKFLARKAL---ENGIPQLTICEDDVLFPPDFESKYSQVKDYLDTRRNDWDVFSGLIADLHPDTKILKVERFDG 132 (232) |
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74 Confidence 33333333222222 234455567788888888888888888887753221 11 23444444444 |
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75 |
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76 |
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77 Q 6VYB_A 776 QALNTLVKQLSSNFGAISSVLNDILSRLDPPEAE---VQIDRLITGRLQSLQT 825 (966) |
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78 Q Consensus 776 qalntlvkqlssnfgaissvlndilsrldppeae---vqidrlitgrlqslqt 825 (966) |
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79 ...-++=|-.|--|..-+.-.-++|+..||.... ..|||.+.. .+.|.. |
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80 T Consensus 133 ~~yv~iDkMtSmV~NIYs~~al~~L~~Wd~~~~d~~TNTIDRylE~-~~~LrV 184 (232) |
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81 T APK54672.1|GT1 133 IEYVTIDKMTSMVFNIYSESALEKLAQWDEKNHDAETNTIDRYLEN-QEGLRV 184 (232) |
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82 Confidence 4555555555555555555555788888876544 468998753 334433 |
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83 |
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84 |
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85 No 5 |
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86 >AAD04130.1|GT13|24-440|6.3e-183 |
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87 Probab=1.69 E-value=23 Score=25.58 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=24.8 Template_Neff=3.500 |
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88 |
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89 Q 6VYB_A 302 ADSFVIRGDEVRQIAPGQTGKIADYNYKLP-DDFTGCVIAWNSNNLDNY 349 (966) |
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90 Q Consensus 302 adsfvirgdevrqiapgqtgkiadynyklp-ddftgcviawnsnnldny 349 (966) |
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91 +++++|-.|. -.|||.--.-...--+-|. |+---||-|||.|..... |
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92 T Consensus 156 ~~~VII~EdD-m~iapDFf~yf~~~~~lL~~D~sl~cvSaWNDNG~~~~ 203 (390) |
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93 T AAD04130.1|GT1 156 FSRVIIVEDD-LEIAPDFFSYFSATYPLLDRDPSLWCVSAWNDNGKEQF 203 (390) |
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94 Confidence 3344444433 3566653322222222233 444579999999987654 |
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95 |
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96 |
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97 No 6 |
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98 >ACR10769.1|PL1|79-276|1.4e-54 |
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99 Probab=1.28 E-value=33 Score=21.64 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=33.8 Template_Neff=5.700 |
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100 |
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101 Q 6VYB_A 59 KSN-IIRGWIFGTTLD--SKSLLIVNNATNVVIKVCEFQFCNDPFLGVCTF-EYVSF 111 (966) |
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102 Q Consensus 59 ksn-iirgwifgttld--sksllivnnatnvvikvcefqfcndpflgvctf-eyvsf 111 (966) |
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103 .+| |||-.-|-...+ ...-+-++++.+|.|--|+|.-..|-.+.+..- .||.+ |
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104 T Consensus 59 ~~NVIIRnl~~~~~~~~~~~Dai~i~~s~nVWIDHcsfs~~~Dg~ldv~~~s~~VTi 115 (196) |
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105 T ACR10769.1|PL1 59 ASNVIIRNLRIRDGNDGFDGDAISIDGSSNVWIDHCSFSWGGDGLIDIKKGSDNVTI 115 (196) |
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106 Confidence 344 566666655553 223333578899999999999998887755432 34443 |
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107 |
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108 |
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109 No 7 |
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110 >AAR43340.1|GT19|17-374|6.8e-144 |
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111 Probab=1.27 E-value=33 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=11.3 Template_Neff=5.700 |
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112 |
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113 Q 6VYB_A 254 SVYAWNRKRISNCV 267 (966) |
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114 Q Consensus 254 svyawnrkrisncv 267 (966) |
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115 +|+||..+|+..-. |
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116 T Consensus 116 qvWAWr~~R~k~i~ 129 (357) |
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117 T AAR43340.1|GT1 116 QVWAWRPGRIKKIK 129 (357) |
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118 Confidence 79999999987643 |
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119 |
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120 |
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121 No 8 |
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122 >BAD47100.1|GH125|74-473|3.2e-189 |
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123 Probab=1.27 E-value=32 Score=24.58 Aligned_cols=41 Identities=32% Similarity=0.588 Sum_probs=32.3 Template_Neff=3.500 |
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124 |
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125 Q 6VYB_A 98 DPFLGVCTFEYVSFKNLREFVFKNIDGYF-------KIYSKHTPINLV 138 (966) |
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126 Q Consensus 98 dpflgvctfeyvsfknlrefvfknidgyf-------kiyskhtpinlv 138 (966) |
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127 -|+||-|.-+---+.|-|+|+...-.-|| -|=|.|++.+-+ |
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128 T Consensus 291 lPylG~~~~~DpiYqnTR~~iLS~~NPYy~~G~~~~GIGsPHtg~~~i 338 (402) |
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129 T BAD47100.1|GH1 291 LPYLGYCSKDDPIYQNTRRFILSKENPYFYEGKAAEGIGSPHTGPRYI 338 (402) |
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130 Confidence 48899999888889999999988766665 266778876655 |
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131 |
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132 |
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133 No 9 |
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134 >ACY95489.1|CBM14|33-88|9.4e-16 |
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135 Probab=1.13 E-value=38 Score=18.15 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=23.4 Template_Neff=6.300 |
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136 |
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137 Q 6VYB_A 238 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSA 277 (966) |
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138 Q Consensus 238 tnlcpfgevfnatrfasvyawnrkrisncvadysvlynsa 277 (966) |
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139 ...||.|.+|+...-.=++.++-+ .|--| |+-|||. |
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140 T Consensus 39 ~~~Cp~g~~FD~~~~~C~~~~~v~---~C~~~-~~~~~~~ 74 (81) |
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141 T ACY95489.1|CBM 39 EFSCPPGLVFDPETQTCDWPENVD---DCSNC-SIRYNSG 74 (81) |
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142 Confidence 458999999998876666644431 24433 5666664 |
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143 |
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144 |
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145 No 10 |
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146 >AAK92730.1|PL1_1.hmm|3.6e-111|138-336 |
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147 Probab=0.87 E-value=49 Score=21.39 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=43.2 Template_Neff=2.500 |
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148 |
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149 Q 6VYB_A 277 ASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADY 326 (966) |
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150 Q Consensus 277 asfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiady 326 (966) |
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151 .|+.|..--|++-.--+.-|+|--|+....|.|=.+..+.|+..|-|.|- |
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152 T Consensus 18 ~S~KTIDGRGa~V~I~~g~citiq~v~nVIIHgi~IH~c~p~~~g~ir~s 67 (199) |
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153 T AAK92730.1|PL1 18 NSFKTIDGRGANVHIANGACITIQYVSNVIIHGIHIHDCKPGGNGMVRDS 67 (199) |
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154 Confidence 46777777888888888899999999999999999999999998888764 |
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155 |
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156 |