Mercurial > repos > guerler > springsuite
annotate planemo/lib/python3.7/site-packages/networkx/__init__.py @ 1:56ad4e20f292 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
---|---|
date | Fri, 31 Jul 2020 00:32:28 -0400 |
parents | |
children |
rev | line source |
---|---|
1
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
1 """ |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
2 NetworkX |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
3 ======== |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
4 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
5 NetworkX is a Python package for the creation, manipulation, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
6 and study of the structure, dynamics, and functions |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
7 of complex networks. |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
8 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
9 Website (including documentation):: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
10 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
11 http://networkx.github.io |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
12 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
13 Mailing list:: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
14 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
15 https://groups.google.com/forum/#!forum/networkx-discuss |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
16 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
17 Source:: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
18 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
19 https://github.com/networkx/networkx |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
20 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
21 Bug reports:: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
22 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
23 https://github.com/networkx/networkx/issues |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
24 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
25 Simple example |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
26 -------------- |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
27 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
28 Find the shortest path between two nodes in an undirected graph:: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
29 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
30 >>> import networkx as nx |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
31 >>> G = nx.Graph() |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
32 >>> G.add_edge('A', 'B', weight=4) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
33 >>> G.add_edge('B', 'D', weight=2) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
34 >>> G.add_edge('A', 'C', weight=3) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
35 >>> G.add_edge('C', 'D', weight=4) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
36 >>> nx.shortest_path(G, 'A', 'D', weight='weight') |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
37 ['A', 'B', 'D'] |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
38 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
39 Bugs |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
40 ---- |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
41 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
42 Please report any bugs that you find `here <https://github.com/networkx/networkx/issues>`_. |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
43 Or, even better, fork the repository on GitHub and create a pull request (PR). |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
44 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
45 License |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
46 ------- |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
47 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
48 Released under the 3-Clause BSD license:: |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
49 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
50 Copyright (C) 2004-2019 NetworkX Developers |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
51 Aric Hagberg <hagberg@lanl.gov> |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
52 Dan Schult <dschult@colgate.edu> |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
53 Pieter Swart <swart@lanl.gov> |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
54 """ |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
55 # Copyright (C) 2004-2019 by |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
56 # Aric Hagberg <hagberg@lanl.gov> |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
57 # Dan Schult <dschult@colgate.edu> |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
58 # Pieter Swart <swart@lanl.gov> |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
59 # All rights reserved. |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
60 # BSD license. |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
61 # |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
62 # Add platform dependent shared library path to sys.path |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
63 # |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
64 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
65 import sys |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
66 if sys.version_info[:2] < (3, 5): |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
67 m = "Python 3.5 or later is required for NetworkX (%d.%d detected)." |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
68 raise ImportError(m % sys.version_info[:2]) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
69 del sys |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
70 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
71 # Release data |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
72 from networkx import release |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
73 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
74 __author__ = '%s <%s>\n%s <%s>\n%s <%s>' % \ |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
75 (release.authors['Hagberg'] + release.authors['Schult'] + |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
76 release.authors['Swart']) |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
77 __license__ = release.license |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
78 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
79 __date__ = release.date |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
80 __version__ = release.version |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
81 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
82 __bibtex__ = """@inproceedings{hagberg-2008-exploring, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
83 author = {Aric A. Hagberg and Daniel A. Schult and Pieter J. Swart}, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
84 title = {Exploring network structure, dynamics, and function using {NetworkX}}, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
85 year = {2008}, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
86 month = Aug, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
87 urlpdf = {http://math.lanl.gov/~hagberg/Papers/hagberg-2008-exploring.pdf}, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
88 booktitle = {Proceedings of the 7th Python in Science Conference (SciPy2008)}, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
89 editors = {G\"{a}el Varoquaux, Travis Vaught, and Jarrod Millman}, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
90 address = {Pasadena, CA USA}, |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
91 pages = {11--15} |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
92 }""" |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
93 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
94 # These are import orderwise |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
95 from networkx.exception import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
96 import networkx.utils |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
97 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
98 import networkx.classes.filters |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
99 import networkx.classes |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
100 from networkx.classes import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
101 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
102 import networkx.convert |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
103 from networkx.convert import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
104 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
105 import networkx.convert_matrix |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
106 from networkx.convert_matrix import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
107 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
108 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
109 import networkx.relabel |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
110 from networkx.relabel import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
111 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
112 import networkx.generators |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
113 from networkx.generators import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
114 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
115 import networkx.readwrite |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
116 from networkx.readwrite import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
117 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
118 # Need to test with SciPy, when available |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
119 import networkx.algorithms |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
120 from networkx.algorithms import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
121 import networkx.linalg |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
122 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
123 from networkx.linalg import * |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
124 from networkx.testing.test import run as test |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
125 |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
126 import networkx.drawing |
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff
changeset
|
127 from networkx.drawing import * |