annotate planemo/lib/python3.7/site-packages/rdflib/plugins/stores/regexmatching.py @ 1:56ad4e20f292 draft

"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:32:28 -0400
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1 """
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2 This wrapper intercepts calls through the store interface which make use of
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3 the REGEXTerm class to represent matches by REGEX instead of literal
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4 comparison.
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5
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6 Implemented for stores that don't support this and essentially
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7 provides the support by replacing the REGEXTerms by wildcards (None) and
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8 matching against the results from the store it's wrapping.
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9 """
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10
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11 from rdflib.store import Store
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12 from rdflib.graph import Graph
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13 import re
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14
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15 # Store is capable of doing its own REGEX matching
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16 NATIVE_REGEX = 0
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17 # Store uses Python's re module internally for REGEX matching
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18 PYTHON_REGEX = 1
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19
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20
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21 class REGEXTerm(str):
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22 """
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23 REGEXTerm can be used in any term slot and is interpreted as a request to
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24 perform a REGEX match (not a string comparison) using the value
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25 (pre-compiled) for checking rdf:type matches
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26 """
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27 def __init__(self, expr):
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28 self.compiledExpr = re.compile(expr)
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29
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30 def __reduce__(self):
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31 return (REGEXTerm, (str(''),))
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32
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33
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34 def regexCompareQuad(quad, regexQuad):
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35 for index in range(4):
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36 if isinstance(regexQuad[index], REGEXTerm) and not \
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37 regexQuad[index].compiledExpr.match(quad[index]):
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38 return False
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39 return True
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40
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41
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42 class REGEXMatching(Store):
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43 def __init__(self, storage):
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44 self.storage = storage
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45 self.context_aware = storage.context_aware
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46 # NOTE: this store can't be formula_aware as it doesn't have enough
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47 # info to reverse the removal of a quoted statement.
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48 self.formula_aware = storage.formula_aware
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49 self.transaction_aware = storage.transaction_aware
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50
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51 def open(self, configuration, create=True):
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52 return self.storage.open(configuration, create)
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53
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54 def close(self, commit_pending_transaction=False):
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55 self.storage.close()
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56
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57 def destroy(self, configuration):
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58 self.storage.destroy(configuration)
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59
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60 def add(self, triple, context, quoted=False):
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61 (subject, predicate, object_) = triple
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62 self.storage.add((subject, predicate, object_), context, quoted)
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63
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64 def remove(self, triple, context=None):
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65 (subject, predicate, object_) = triple
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66 if isinstance(subject, REGEXTerm) or \
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67 isinstance(predicate, REGEXTerm) or \
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68 isinstance(object_, REGEXTerm) or \
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69 (context is not None
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70 and isinstance(context.identifier, REGEXTerm)):
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71 # One or more of the terms is a REGEX expression, so we must
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72 # replace it / them with wildcard(s)and match after we query.
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73 s = not isinstance(subject, REGEXTerm) and subject or None
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74 p = not isinstance(predicate, REGEXTerm) and predicate or None
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75 o = not isinstance(object_, REGEXTerm) and object_ or None
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76 c = (context is not None
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77 and not isinstance(context.identifier, REGEXTerm)) \
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78 and context \
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79 or None
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80
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81 removeQuadList = []
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82 for (s1, p1, o1), cg in self.storage.triples((s, p, o), c):
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83 for ctx in cg:
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84 ctx = ctx.identifier
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85 if regexCompareQuad(
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86 (s1, p1, o1, ctx),
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87 (subject, predicate, object_, context
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88 is not None and context.identifier or context)):
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89 removeQuadList.append((s1, p1, o1, ctx))
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90 for s, p, o, c in removeQuadList:
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91 self.storage.remove((s, p, o), c and Graph(self, c) or c)
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92 else:
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93 self.storage.remove((subject, predicate, object_), context)
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94
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95 def triples(self, triple, context=None):
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96 (subject, predicate, object_) = triple
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97 if isinstance(subject, REGEXTerm) or \
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98 isinstance(predicate, REGEXTerm) or \
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99 isinstance(object_, REGEXTerm) or \
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100 (context is not None
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101 and isinstance(context.identifier, REGEXTerm)):
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102 # One or more of the terms is a REGEX expression, so we must
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103 # replace it / them with wildcard(s) and match after we query.
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104 s = not isinstance(subject, REGEXTerm) and subject or None
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105 p = not isinstance(predicate, REGEXTerm) and predicate or None
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106 o = not isinstance(object_, REGEXTerm) and object_ or None
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107 c = (context is not None
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108 and not isinstance(context.identifier, REGEXTerm)) \
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109 and context \
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110 or None
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111 for (s1, p1, o1), cg in self.storage.triples((s, p, o), c):
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112 matchingCtxs = []
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113 for ctx in cg:
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114 if c is None:
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115 if context is None \
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116 or context.identifier.compiledExpr.match(
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117 ctx.identifier):
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118 matchingCtxs.append(ctx)
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119 else:
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120 matchingCtxs.append(ctx)
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121 if matchingCtxs \
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122 and regexCompareQuad((s1, p1, o1, None),
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123 (subject, predicate, object_, None)):
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124 yield (s1, p1, o1), (c for c in matchingCtxs)
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125 else:
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126 for (s1, p1, o1), cg in self.storage.triples(
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127 (subject, predicate, object_), context):
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128 yield (s1, p1, o1), cg
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129
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130 def __len__(self, context=None):
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131 # NOTE: If the context is a REGEX this could be an expensive
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132 # proposition
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133 return self.storage.__len__(context)
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134
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135 def contexts(self, triple=None):
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136 # NOTE: There is no way to control REGEX matching for this method at
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137 # this level as it only returns the contexts, not the matching
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138 # triples.
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139 for ctx in self.storage.contexts(triple):
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140 yield ctx
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141
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142 def remove_context(self, identifier):
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143 self.storage.remove((None, None, None), identifier)
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144
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145 def bind(self, prefix, namespace):
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146 self.storage.bind(prefix, namespace)
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147
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148 def prefix(self, namespace):
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149 return self.storage.prefix(namespace)
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150
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151 def namespace(self, prefix):
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152 return self.storage.namespace(prefix)
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153
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154 def namespaces(self):
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155 return self.storage.namespaces()
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156
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157 def commit(self):
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158 self.storage.commit()
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159
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160 def rollback(self):
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161 self.storage.rollback()