Mercurial > repos > guerler > springsuite
annotate planemo/lib/python3.7/site-packages/schema_salad/main.py @ 1:56ad4e20f292 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
| author | guerler | 
|---|---|
| date | Fri, 31 Jul 2020 00:32:28 -0400 | 
| parents | |
| children | 
| rev | line source | 
|---|---|
| 
1
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
1 """Command line interface to schema-salad.""" | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
2 from __future__ import absolute_import, print_function | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
3 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
4 import argparse | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
5 import logging | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
6 import os | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
7 import sys | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
8 from typing import Any, Dict, List, Mapping, MutableSequence, Optional, Union, cast | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
9 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
10 import pkg_resources # part of setuptools | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
11 import six | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
12 from rdflib.parser import Parser | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
13 from rdflib.plugin import register | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
14 from six.moves import urllib | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
15 from typing_extensions import Text # pylint: disable=unused-import | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
16 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
17 from ruamel.yaml.comments import CommentedSeq | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
18 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
19 from . import codegen, jsonld_context, schema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
20 from .avro.schema import SchemaParseException | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
21 from .exceptions import ValidationException, to_one_line_messages | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
22 from .makedoc import makedoc | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
23 from .ref_resolver import Loader, file_uri | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
24 from .utils import json_dumps | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
25 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
26 # move to a regular typing import when Python 3.3-3.6 is no longer supported | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
27 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
28 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
29 register("json-ld", Parser, "rdflib_jsonld.parser", "JsonLDParser") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
30 _logger = logging.getLogger("salad") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
31 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
32 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
33 def printrdf( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
34 workflow, # type: str | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
35 wf, # type: Union[List[Dict[Text, Any]], Dict[Text, Any]] | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
36 ctx, # type: Dict[Text, Any] | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
37 sr, # type: str | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
38 ): | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
39 # type: (...) -> None | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
40 g = jsonld_context.makerdf(workflow, wf, ctx) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
41 print(g.serialize(format=sr, encoding="utf-8").decode("utf-8")) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
42 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
43 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
44 def main(argsl=None): # type: (Optional[List[str]]) -> int | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
45 if argsl is None: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
46 argsl = sys.argv[1:] | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
47 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
48 parser = argparse.ArgumentParser() | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
49 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
50 "--rdf-serializer", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
51 help="Output RDF serialization format used by --print-rdf" | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
52 "(one of turtle (default), n3, nt, xml)", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
53 default="turtle", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
54 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
55 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
56 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
57 "--skip-schemas", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
58 action="store_true", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
59 default=False, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
60 help="If specified, ignore $schemas sections.", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
61 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
62 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
63 "--strict-foreign-properties", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
64 action="store_true", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
65 help="Strict checking of foreign properties", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
66 default=False, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
67 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
68 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
69 exgroup = parser.add_mutually_exclusive_group() | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
70 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
71 "--print-jsonld-context", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
72 action="store_true", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
73 help="Print JSON-LD context for schema", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
74 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
75 exgroup.add_argument("--print-rdfs", action="store_true", help="Print RDF schema") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
76 exgroup.add_argument("--print-avro", action="store_true", help="Print Avro schema") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
77 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
78 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
79 "--print-rdf", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
80 action="store_true", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
81 help="Print corresponding RDF graph for document", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
82 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
83 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
84 "--print-pre", action="store_true", help="Print document after preprocessing" | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
85 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
86 exgroup.add_argument("--print-index", action="store_true", help="Print node index") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
87 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
88 "--print-metadata", action="store_true", help="Print document metadata" | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
89 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
90 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
91 "--print-inheritance-dot", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
92 action="store_true", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
93 help="Print graphviz file of inheritance", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
94 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
95 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
96 "--print-fieldrefs-dot", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
97 action="store_true", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
98 help="Print graphviz file of field refs", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
99 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
100 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
101 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
102 "--codegen", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
103 type=str, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
104 metavar="language", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
105 help="Generate classes in target language, currently supported: python, java", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
106 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
107 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
108 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
109 "--codegen-target", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
110 type=str, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
111 default=None, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
112 help="Defaults to sys.stdout for python and ./ for Java", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
113 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
114 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
115 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
116 "--codegen-examples", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
117 type=str, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
118 metavar="directory", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
119 default=None, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
120 help="Directory of example documents for test case generation (Java only).", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
121 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
122 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
123 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
124 "--print-oneline", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
125 action="store_true", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
126 help="Print each error message in oneline", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
127 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
128 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
129 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
130 "--print-doc", action="store_true", help="Print HTML schema documentation page" | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
131 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
132 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
133 exgroup = parser.add_mutually_exclusive_group() | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
134 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
135 "--strict", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
136 action="store_true", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
137 help="Strict validation (unrecognized or out of place fields are error)", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
138 default=True, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
139 dest="strict", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
140 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
141 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
142 "--non-strict", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
143 action="store_false", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
144 help="Lenient validation (ignore unrecognized fields)", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
145 default=True, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
146 dest="strict", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
147 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
148 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
149 exgroup = parser.add_mutually_exclusive_group() | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
150 exgroup.add_argument("--verbose", action="store_true", help="Default logging") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
151 exgroup.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
152 "--quiet", action="store_true", help="Only print warnings and errors." | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
153 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
154 exgroup.add_argument("--debug", action="store_true", help="Print even more logging") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
155 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
156 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
157 "--only", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
158 action="append", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
159 help="Use with --print-doc, document only listed types", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
160 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
161 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
162 "--redirect", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
163 action="append", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
164 help="Use with --print-doc, override default link for type", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
165 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
166 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
167 "--brand", help="Use with --print-doc, set the 'brand' text in nav bar" | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
168 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
169 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
170 "--brandlink", help="Use with --print-doc, set the link for 'brand' in nav bar" | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
171 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
172 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
173 "--primtype", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
174 default="#PrimitiveType", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
175 help="Use with --print-doc, link to use for primitive types (string, int etc)", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
176 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
177 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
178 parser.add_argument("schema", type=str, nargs="?", default=None) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
179 parser.add_argument("document", type=str, nargs="?", default=None) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
180 parser.add_argument( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
181 "--version", "-v", action="store_true", help="Print version", default=None | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
182 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
183 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
184 args = parser.parse_args(argsl) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
185 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
186 if args.version is None and args.schema is None: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
187 print("{}: error: too few arguments".format(sys.argv[0])) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
188 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
189 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
190 if args.quiet: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
191 _logger.setLevel(logging.WARN) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
192 if args.debug: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
193 _logger.setLevel(logging.DEBUG) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
194 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
195 pkg = pkg_resources.require("schema_salad") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
196 if pkg: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
197 if args.version: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
198 print("{} Current version: {}".format(sys.argv[0], pkg[0].version)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
199 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
200 else: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
201 _logger.info("%s Current version: %s", sys.argv[0], pkg[0].version) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
202 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
203 # Get the metaschema to validate the schema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
204 metaschema_names, metaschema_doc, metaschema_loader = schema.get_metaschema() | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
205 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
206 # Load schema document and resolve refs | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
207 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
208 schema_uri = args.schema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
209 if not ( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
210 urllib.parse.urlparse(schema_uri)[0] | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
211 and urllib.parse.urlparse(schema_uri)[0] in [u"http", u"https", u"file"] | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
212 ): | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
213 schema_uri = file_uri(os.path.abspath(schema_uri)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
214 schema_raw_doc = metaschema_loader.fetch(schema_uri) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
215 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
216 try: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
217 schema_doc, schema_metadata = metaschema_loader.resolve_all( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
218 schema_raw_doc, schema_uri | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
219 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
220 except ValidationException as e: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
221 _logger.error( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
222 "Schema `%s` failed link checking:\n%s", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
223 args.schema, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
224 Text(e), | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
225 exc_info=(True if args.debug else False), | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
226 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
227 _logger.debug("Index is %s", list(metaschema_loader.idx.keys())) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
228 _logger.debug("Vocabulary is %s", list(metaschema_loader.vocab.keys())) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
229 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
230 except (RuntimeError) as e: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
231 _logger.error( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
232 "Schema `%s` read error:\n%s", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
233 args.schema, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
234 Text(e), | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
235 exc_info=(True if args.debug else False), | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
236 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
237 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
238 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
239 if args.print_doc: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
240 makedoc(args) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
241 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
242 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
243 # Optionally print the schema after ref resolution | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
244 if not args.document and args.print_pre: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
245 print(json_dumps(schema_doc, indent=4)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
246 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
247 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
248 if not args.document and args.print_index: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
249 print(json_dumps(list(metaschema_loader.idx.keys()), indent=4)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
250 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
251 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
252 # Validate the schema document against the metaschema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
253 try: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
254 schema.validate_doc( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
255 metaschema_names, schema_doc, metaschema_loader, args.strict | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
256 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
257 except ValidationException as e: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
258 _logger.error("While validating schema `%s`:\n%s", args.schema, Text(e)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
259 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
260 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
261 # Get the json-ld context and RDFS representation from the schema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
262 metactx = schema.collect_namespaces(schema_metadata) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
263 if "$base" in schema_metadata: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
264 metactx["@base"] = schema_metadata["$base"] | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
265 if isinstance(schema_doc, CommentedSeq): | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
266 (schema_ctx, rdfs) = jsonld_context.salad_to_jsonld_context(schema_doc, metactx) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
267 else: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
268 raise ValidationException( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
269 "Expected a CommentedSeq, got {}: {}.".format(type(schema_doc), schema_doc) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
270 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
271 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
272 # Create the loader that will be used to load the target document. | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
273 document_loader = Loader(schema_ctx, skip_schemas=args.skip_schemas) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
274 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
275 if args.codegen: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
276 codegen.codegen( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
277 args.codegen, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
278 cast(List[Dict[Text, Any]], schema_doc), | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
279 schema_metadata, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
280 document_loader, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
281 target=args.codegen_target, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
282 examples=args.codegen_examples, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
283 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
284 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
285 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
286 # Make the Avro validation that will be used to validate the target | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
287 # document | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
288 if isinstance(schema_doc, MutableSequence): | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
289 avsc_obj = schema.make_avro(schema_doc, document_loader) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
290 try: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
291 avsc_names = schema.make_avro_schema_from_avro(avsc_obj) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
292 except SchemaParseException as err: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
293 _logger.error( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
294 "Schema `%s` error:\n%s", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
295 args.schema, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
296 Text(err), | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
297 exc_info=((type(err), err, None) if args.debug else None), | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
298 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
299 if args.print_avro: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
300 print(json_dumps(avsc_obj, indent=4)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
301 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
302 else: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
303 _logger.error("Schema `%s` must be a list.", args.schema) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
304 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
305 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
306 # Optionally print Avro-compatible schema from schema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
307 if args.print_avro: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
308 print(json_dumps(avsc_obj, indent=4)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
309 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
310 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
311 # Optionally print the json-ld context from the schema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
312 if args.print_jsonld_context: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
313 j = {"@context": schema_ctx} | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
314 print(json_dumps(j, indent=4, sort_keys=True)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
315 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
316 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
317 # Optionally print the RDFS graph from the schema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
318 if args.print_rdfs: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
319 print(rdfs.serialize(format=args.rdf_serializer).decode("utf-8")) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
320 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
321 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
322 if args.print_metadata and not args.document: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
323 print(json_dumps(schema_metadata, indent=4)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
324 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
325 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
326 if args.print_inheritance_dot: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
327 schema.print_inheritance(schema_doc, sys.stdout) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
328 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
329 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
330 if args.print_fieldrefs_dot: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
331 schema.print_fieldrefs(schema_doc, document_loader, sys.stdout) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
332 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
333 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
334 # If no document specified, all done. | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
335 if not args.document: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
336 print("Schema `{}` is valid".format(args.schema)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
337 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
338 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
339 # Load target document and resolve refs | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
340 try: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
341 uri = args.document | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
342 document, doc_metadata = document_loader.resolve_ref( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
343 uri, strict_foreign_properties=args.strict_foreign_properties | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
344 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
345 except ValidationException as e: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
346 msg = to_one_line_messages(e) if args.print_oneline else six.text_type(e) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
347 _logger.error( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
348 "Document `%s` failed validation:\n%s", | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
349 args.document, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
350 msg, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
351 exc_info=args.debug, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
352 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
353 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
354 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
355 # Optionally print the document after ref resolution | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
356 if args.print_pre: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
357 print(json_dumps(document, indent=4)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
358 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
359 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
360 if args.print_index: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
361 print(json_dumps(list(document_loader.idx.keys()), indent=4)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
362 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
363 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
364 # Validate the user document against the schema | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
365 try: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
366 schema.validate_doc( | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
367 avsc_names, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
368 document, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
369 document_loader, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
370 args.strict, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
371 strict_foreign_properties=args.strict_foreign_properties, | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
372 ) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
373 except ValidationException as e: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
374 msg = to_one_line_messages(e) if args.print_oneline else six.text_type(e) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
375 _logger.error("While validating document `%s`:\n%s" % (args.document, msg)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
376 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
377 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
378 # Optionally convert the document to RDF | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
379 if args.print_rdf: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
380 if isinstance(document, (Mapping, MutableSequence)): | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
381 printrdf(args.document, document, schema_ctx, args.rdf_serializer) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
382 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
383 else: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
384 print("Document must be a dictionary or list.") | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
385 return 1 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
386 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
387 if args.print_metadata: | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
388 print(json_dumps(doc_metadata, indent=4)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
389 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
390 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
391 print("Document `{}` is valid".format(args.document)) | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
392 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
393 return 0 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
394 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
395 | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
396 if __name__ == "__main__": | 
| 
 
56ad4e20f292
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
 
guerler 
parents:  
diff
changeset
 | 
397 sys.exit(main(sys.argv[1:])) | 
