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annotate temp/tmalign.monomerA.rebuilt.templateA.out @ 17:c790d25086dc draft

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"planemo upload commit b0ede77caf410ab69043d33a44e190054024d340-dirty"
author guerler
date Wed, 28 Oct 2020 05:11:56 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1
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2 *********************************************************************
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3 * TM-align (Version 20190822): protein structure alignment *
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4 * References: Y Zhang, J Skolnick. Nucl Acids Res 33, 2302-9 (2005) *
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5 * Please email comments and suggestions to yangzhanglab@umich.edu *
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6 *********************************************************************
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7
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8 Name of Chain_1: temp/monomerA.rebuilt.pdb (to be superimposed onto Chain_2)
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9 Name of Chain_2: temp/templateA.pdb
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10 Length of Chain_1: 587 residues
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11 Length of Chain_2: 756 residues
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12
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13 Aligned length= 434, RMSD= 5.02, Seq_ID=n_identical/n_aligned= 0.173
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14 TM-score= 0.58734 (if normalized by length of Chain_1, i.e., LN=587, d0=8.49)
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15 TM-score= 0.47130 (if normalized by length of Chain_2, i.e., LN=756, d0=9.42)
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16 (You should use TM-score normalized by length of the reference structure)
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17
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18 (":" denotes residue pairs of d < 5.0 Angstrom, "." denotes other aligned residues)
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19 AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSDNVTDFNAIATCDWTNAG------------------------------------------------------------------------------------------------------------------------------------------------DYILANTCTER--LKLFAAETLKATEETFKLS-YGIATVREVLSDREL------------HLSWEVGKPRPPLNRNY-VFTGYRVT----K--NSKVQIGEYTFEKGDYGDAVVYRGTTTYKL------------N--VGDYFVLTSH--T--VP-LS-A-----------P-TLV-PQEHYVRITGLYPTLNI-SD---EFSS-NVANYQKV-GQKYSTLQGPPGTGKSHFAIGLALYY-PSA-RIVYTA-CSHAAVDALCEKALKYLPIDCSRIIPARARVE--------CF-DKF-----------------------------------KVNS-TLEQYVFCT----VNA--LPETTADIVVFDEI-SATNYDLSVVNARLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNSVCRLKT-I-GPDFLGTCRRCPAEIVDTVSALVYD-NKLKAHKD---K------------SAQCFKFYKGVITHD--VSSAINRPQIGVVREFLTRN-PAWR-K--AVFISPYNSQNAVA-SKI--LG------LP---TQTVDSSQGSEYDYVIFTQ-T----TETAHSCNVNRFNVAITRAKVGILC-I-S---D--RDLYDKL-QF--TS-LEIP----RRN------
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20 .. ::...:.. ::::::::::::::::..: .:::..... ... ... ..::.... . ..:.::..... ....... . ...::::::. : :: :: : : .:. ..:.:. :::::::::. :. ::.: :::::::: ::::::::.::::::::::::::::: ::: :::::: ::::::::::::::::::: .:.:. .:.::. :: ::. .::. .::.::::: ::: ::::.: ::::::: :::::::::::::::: ::::::::::::::::::...... .::::::::.: . .:::::::::::::::::::::::: :::::::: : :::::.:....:::. ::::::.............. .:.. . ::::::::::...: .:. .: .. ::::::::::::::::::: : :::.::::::::::::::::::::: : : : :::::.. :: :: :::. .:.
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21 ---------------------------------------------------------------------------------------------------------------------NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSVVLLCRIPCAQTKWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKDATIP-PLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQEHISV------SWSLALNNRHLASFT---------KVA--IGDEMILWYSGMQHPDWEGRGYIVRLP-------NDTFTLE-----LKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDI-SFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLK-VVRLT-AKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDTKFR-TVLIDESTQASEPECLIPIVKGAK-QVILVGDHQQLGPVILERKAADAG-LKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTVQLV
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22
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23 Total CPU time is 1.46 seconds