Mercurial > repos > guerler > springsuite

annotate planemo/lib/python3.7/site-packages/bioblend/galaxy/tools/inputs.py @ 0:d30785e31577 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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1 class InputsBuilder(object):
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2 """
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3 """
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4
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5 def __init__(self):
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6 self._input_dict = {}
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7
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8 def set(self, name, input):
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9 self._input_dict[name] = input
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10 return self
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11
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12 def set_param(self, name, value):
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13 return self.set(name, param(value=value))
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14
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15 def set_dataset_param(self, name, value, src="hda"):
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16 return self.set(name, dataset(value, src=src))
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17
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18 def to_dict(self):
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19 values = {}
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20 for key, value in self.flat_iter():
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21 if hasattr(value, "value"):
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22 value = value.value
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23 values[key] = value
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24 return values
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25
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26 def flat_iter(self, prefix=None):
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27 for key, value in self._input_dict.items():
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28 effective_key = key if prefix is None else "%s|%s" % (prefix, key)
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29 if hasattr(value, "flat_iter"):
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30 for flattened_key, flattened_value in value.flat_iter(effective_key):
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31 yield flattened_key, flattened_value
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32 else:
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33 yield effective_key, value
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34
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35
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36 class RepeatBuilder(object):
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37
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38 def __init__(self):
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39 self._instances = []
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40
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41 def instance(self, inputs):
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42 self._instances.append(inputs)
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43 return self
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44
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45 def flat_iter(self, prefix=None):
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46 for index, instance in enumerate(self._instances):
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47 index_prefix = "%s_%d" % (prefix, index)
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48 for key, value in instance.flat_iter(index_prefix):
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49 yield key, value
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51
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52 class Param(object):
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53
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54 def __init__(self, value):
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55 self.value = value
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56
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57
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58 class DatasetParam(Param):
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59
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60 def __init__(self, value, src="hda"):
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61 if not isinstance(value, dict):
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62 value = dict(src=src, id=value)
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63 super().__init__(value)
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64
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65
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66 inputs = InputsBuilder
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67 repeat = RepeatBuilder
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68 conditional = InputsBuilder
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69 param = Param
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70 dataset = DatasetParam
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71
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72 __all__ = ("inputs", "repeat", "conditional", "param")