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annotate planemo/lib/python3.7/site-packages/cwltool/tests/subgraph/count-lines1-wf.cwl @ 0:d30785e31577 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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1 #!/usr/bin/env cwl-runner
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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2 class: Workflow
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3 cwlVersion: v1.0
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4
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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5 inputs:
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6 file1:
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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7 type: File
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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8 file2:
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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9 type: File
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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10 file3:
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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11 type: File
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12
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13 outputs:
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14 count_output:
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15 type: int
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16 outputSource: step2/output
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17
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18 output3:
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19 type: File
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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20 outputSource: step3/output
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21
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22 output4:
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23 type: int
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24 outputSource: step4/output
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25
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26 output5:
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27 type: File
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28 outputSource: step5/output
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29
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30 steps:
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31 step1:
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32 run: wc-tool.cwl
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33 in:
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34 file1: file1
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35 out: [output]
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36
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37 step2:
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38 run: parseInt-tool.cwl
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39 in:
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40 file1: step1/output
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41 out: [output]
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42
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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43 step3:
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44 label: step that is independent of step1 and step2
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45 run: wc-tool.cwl
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46 in:
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47 file1: file2
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48 out: [output]
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49
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50 step4:
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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51 label: step that also depends on step1
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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52 run: parseInt-tool.cwl
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53 in:
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54 file1: step1/output
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55 out: [output]
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56
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57 step5:
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58 label: step with two inputs
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59 run: wc-tool.cwl
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60 in:
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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61 file1: file1
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62 file3: file3
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63 out: [output]