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annotate planemo/lib/python3.7/site-packages/cwltool/tests/test_pathmapper.py @ 0:d30785e31577 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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1 import pytest
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2
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3 from cwltool.pathmapper import PathMapper, normalizeFilesDirs
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4
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5
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6 def test_subclass():
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7 class SubPathMapper(PathMapper):
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8 def __init__(self, referenced_files, basedir, stagedir, new):
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9 super(SubPathMapper, self).__init__(referenced_files, basedir, stagedir)
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10 self.new = new
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11
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12 pathmap = SubPathMapper([], '', '', 'new')
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13 assert pathmap.new is not None, 'new'
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14
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15 normalization_parameters = [
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16 ('strip trailing slashes',
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17 {'class': 'Directory',
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18 'location': '/foo/bar/'
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19 },
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20 {'class': 'Directory',
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21 'location': '/foo/bar',
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22 'basename': 'bar'
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23 }
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24 ),
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25 ('file',
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26 {'class': 'File',
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27 'location': 'file1.txt'
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28 },
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29 {'class': 'File',
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30 'location': 'file1.txt',
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31 'basename': 'file1.txt',
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32 'nameext': '.txt',
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33 'nameroot': 'file1'
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34 }
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35 ),
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36 ('file with local uri',
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37 {'class': 'File',
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38 'location': 'file:///foo/file1.txt'
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39 },
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40 {'class': 'File',
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41 'location': 'file:///foo/file1.txt',
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42 'basename': 'file1.txt',
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43 'nameext': '.txt',
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44 'nameroot': 'file1'
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45 }
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46 ),
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47 ('file with http url',
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48 {'class': 'File',
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49 'location': 'http://example.com/file1.txt'
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50 },
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51 {'class': 'File',
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52 'location': 'http://example.com/file1.txt',
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53 'basename': 'file1.txt',
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54 'nameext': '.txt',
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55 'nameroot': 'file1'
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56 }
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57 )
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58 ]
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59
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60 @pytest.mark.parametrize('name,file_dir,expected', normalization_parameters)
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61 def test_normalizeFilesDirs(name, file_dir, expected):
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62 normalizeFilesDirs(file_dir)
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63 assert file_dir == expected, name
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64
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65 # (filename, expected: (nameroot, nameext))
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66 basename_generation_parameters = [
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67 ('foo.bar', ('foo', '.bar')),
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68 ('foo', ('foo', '')),
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69 ('.foo', ('.foo', '')),
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70 ('foo.', ('foo', '.')),
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71 ('foo.bar.baz', ('foo.bar', '.baz'))
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72 ]
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73 @pytest.mark.parametrize('filename,expected', basename_generation_parameters)
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74 def test_basename_field_generation(filename, expected):
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75 nameroot, nameext = expected
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76 expected = {
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77 'class': 'File',
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78 'location': '/foo/' + filename,
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79 'basename': filename,
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80 'nameroot': nameroot,
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81 'nameext': nameext
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82 }
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83
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84 file = {
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85 'class': 'File',
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86 'location': '/foo/' + filename
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87 }
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88
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89 normalizeFilesDirs(file)
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90 assert file == expected