annotate planemo/lib/python3.7/site-packages/cwltool/tests/wf/count-lines1-wf.cwl @ 0:d30785e31577 draft

"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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1 #!/usr/bin/env cwl-runner
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2 class: Workflow
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3 cwlVersion: v1.0
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4 requirements:
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5 ResourceRequirement:
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6 ramMin: 100
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7
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8 inputs:
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9 file1:
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10 type: File
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11
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12 outputs:
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13 count_output:
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14 type: int
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15 outputSource: step2/output
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16
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17 steps:
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18 step1:
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19 run: wc-tool.cwl
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20 in:
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21 file1: file1
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22 out: [output]
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23
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24 step2:
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25 run: parseInt-tool.cwl
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26 in:
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27 file1: step1/output
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28 out: [output]