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annotate planemo/lib/python3.7/site-packages/cwltool/tests/wf/expect_packed.cwl @ 0:d30785e31577 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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1 #!/usr/bin/env cwl-runner
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2 {
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3 "$graph": [
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4 {
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5 "class": "Workflow",
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6 "doc": "Reverse the lines in a document, then sort those lines.",
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7 "hints": [
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8 {
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9 "class": "DockerRequirement",
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10 "dockerPull": "debian:8"
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11 }
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12 ],
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13 "inputs": [
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14 {
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15 "type": "boolean",
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16 "default": true,
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17 "doc": "If true, reverse (decending) sort",
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18 "id": "#main/reverse_sort"
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19 },
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20 {
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21 "type": "File",
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22 "doc": "The input file to be processed.",
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23 "format": "https://www.iana.org/assignments/media-types/text/plain",
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24 "default": {
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25 "class": "File",
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26 "location": "hello.txt"
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27 },
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28 "id": "#main/workflow_input"
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29 }
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30 ],
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31 "outputs": [
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32 {
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33 "type": "File",
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34 "outputSource": "#main/sorted/sorted_output",
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35 "doc": "The output with the lines reversed and sorted.",
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36 "id": "#main/sorted_output"
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37 }
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38 ],
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39 "steps": [
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40 {
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41 "in": [
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42 {
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43 "source": "#main/workflow_input",
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44 "id": "#main/rev/revtool_input"
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45 }
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46 ],
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47 "out": [
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48 "#main/rev/revtool_output"
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49 ],
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50 "run": "#revtool.cwl",
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51 "id": "#main/rev"
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52 },
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53 {
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54 "in": [
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55 {
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56 "source": "#main/reverse_sort",
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57 "id": "#main/sorted/reverse"
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58 },
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59 {
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60 "source": "#main/rev/revtool_output",
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61 "id": "#main/sorted/sorted_input"
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62 }
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63 ],
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64 "out": [
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65 "#main/sorted/sorted_output"
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66 ],
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67 "run": "#sorttool.cwl",
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68 "id": "#main/sorted"
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69 }
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70 ],
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71 "id": "#main",
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72 "$namespaces": {
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73 "iana": "https://www.iana.org/assignments/media-types/"
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74 }
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75 },
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76 {
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77 "class": "CommandLineTool",
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78 "doc": "Reverse each line using the `rev` command",
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79 "inputs": [
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80 {
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81 "type": "File",
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82 "inputBinding": {},
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83 "id": "#revtool.cwl/revtool_input"
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84 }
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85 ],
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86 "outputs": [
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87 {
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88 "type": "File",
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89 "outputBinding": {
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90 "glob": "output.txt"
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91 },
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92 "id": "#revtool.cwl/revtool_output"
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93 }
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94 ],
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95 "baseCommand": "rev",
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96 "stdout": "output.txt",
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97 "id": "#revtool.cwl"
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98 },
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99 {
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100 "class": "CommandLineTool",
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101 "doc": "Sort lines using the `sort` command",
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102 "inputs": [
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103 {
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104 "id": "#sorttool.cwl/reverse",
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105 "type": "boolean",
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106 "inputBinding": {
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107 "position": 1,
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108 "prefix": "--reverse"
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109 }
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110 },
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111 {
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112 "id": "#sorttool.cwl/sorted_input",
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113 "type": "File",
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114 "inputBinding": {
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115 "position": 2
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116 }
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117 }
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118 ],
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119 "outputs": [
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120 {
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121 "id": "#sorttool.cwl/sorted_output",
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122 "type": "File",
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123 "outputBinding": {
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124 "glob": "output.txt"
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125 }
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126 }
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127 ],
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128 "baseCommand": "sort",
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129 "stdout": "output.txt",
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130 "id": "#sorttool.cwl"
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131 }
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132 ],
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133 "cwlVersion": "v1.0",
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134 "$schemas": [
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diff changeset
135 "empty.ttl",
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff changeset
136 "empty2.ttl"
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff changeset
137 ]
d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
guerler
parents:
diff changeset
138 }