annotate planemo/lib/python3.7/site-packages/cwltool/tests/wf/hello-workflow.cwl @ 0:d30785e31577 draft

"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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1 #!/usr/bin/env cwl-runner
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2
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3 cwlVersion: v1.0
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4 class: Workflow
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5
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6 label: "Hello World"
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7 doc: "Outputs a message using echo"
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8
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9 inputs:
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10 usermessage: string
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11
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12 outputs:
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13 response:
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14 outputSource: step0/response
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15 type: File
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16
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17 steps:
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18 step0:
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19 run:
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20 class: CommandLineTool
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21 inputs:
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22 message:
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23 type: string
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24 doc: "The message to print"
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25 default: "Hello World"
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26 inputBinding:
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27 position: 1
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28 baseCommand: echo
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29 arguments:
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30 - "-n"
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31 - "-e"
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32 stdout: response.txt
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33 outputs:
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34 response:
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35 type: stdout
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36 in:
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37 message: usermessage
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38 out: [response]