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annotate planemo/lib/python3.7/site-packages/cwltool/tests/wf/sec-wf-out.cwl @ 0:d30785e31577 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400
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d30785e31577 "planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
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1 #!/usr/bin/env cwl-runner
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2 class: Workflow
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3 cwlVersion: v1.0
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4 inputs: []
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5 outputs:
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6 file1:
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7 type: File
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8 outputSource: step1/file1
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9
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10
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11 steps:
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12 step1:
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13 in: []
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14 out:
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15 - file1
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16 - file1csv
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17 run:
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18 class: CommandLineTool
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19 requirements:
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20 - class: ShellCommandRequirement
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21 arguments:
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22 - shellQuote: false
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23 valueFrom: >
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24 echo "abc" > f.txt;
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25 echo "3" > f.txt.size;
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26 echo "a" > f.txt.firstletter;
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27 echo "a,b,c" > f.csv;
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28 echo "1,2,3" > f.csv.columns;
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29 echo "ignored" > f.txt.ignoreme;
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30 inputs: []
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31 outputs:
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32 file1:
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33 type: File
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34 outputBinding:
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35 glob: "f.txt"
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36 secondaryFiles:
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37 - ".size"
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38 - ".firstletter"
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39 - "^.csv"
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40 file1csv:
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41 type: File
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42 outputBinding:
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43 glob: "f.csv"
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44 secondaryFiles:
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45 - ".columns"