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comparison planemo/lib/python3.7/site-packages/gxformat2-0.13.0.dist-info/METADATA @ 1:56ad4e20f292 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:32:28 -0400
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0:d30785e31577 1:56ad4e20f292
1 Metadata-Version: 2.1
2 Name: gxformat2
3 Version: 0.13.0
4 Summary: Galaxy Workflow Format 2 Descriptions
5 Home-page: https://github.com/galaxyproject/gxformat2
6 Author: Galaxy Project and Community
7 Author-email: jmchilton@gmail.com
8 License: AFL
9 Keywords: galaxy
10 Platform: UNKNOWN
11 Classifier: Development Status :: 5 - Production/Stable
12 Classifier: Intended Audience :: Developers
13 Classifier: Environment :: Console
14 Classifier: License :: OSI Approved :: Academic Free License (AFL)
15 Classifier: Operating System :: POSIX
16 Classifier: Topic :: Software Development
17 Classifier: Topic :: Software Development :: Code Generators
18 Classifier: Topic :: Software Development :: Testing
19 Classifier: Natural Language :: English
20 Classifier: Programming Language :: Python :: 3
21 Classifier: Programming Language :: Python :: 3.5
22 Classifier: Programming Language :: Python :: 3.6
23 Classifier: Programming Language :: Python :: 3.7
24 Classifier: Programming Language :: Python :: 3.8
25 Requires-Dist: six (>=1.9.0)
26 Requires-Dist: bioblend
27 Requires-Dist: pyyaml
28
29
30 .. image:: https://readthedocs.org/projects/pip/badge/?version=latest
31 :target: https://gxformat2.readthedocs.org
32
33 .. image:: https://badge.fury.io/py/gxformat2.svg
34 :target: https://pypi.python.org/pypi/gxformat2/
35
36 .. image:: https://travis-ci.org/jmchilton/gxformat2.png?branch=master
37 :target: https://travis-ci.org/jmchilton/gxformat2
38
39 .. image:: https://coveralls.io/repos/jmchilton/gxformat2/badge.svg?branch=master
40 :target: https://coveralls.io/r/jmchilton/gxformat2?branch=master
41
42
43 This package defines a high-level Galaxy_ workflow description termed "Format
44 2". At this point, these workflows are defined entirely client side and
45 transcoded into traditional (or Format 1?) Galaxy workflows.
46
47 The traditional Galaxy workflow description is not meant to be concise and is
48 neither readily human readable or human writable. Format 2 addresses all three
49 of these limitations.
50
51 Format 2 workflow is a highly experimental format and will change rapidly in
52 potentially backward incompatible ways until the code is merged into the
53 Galaxy server and enabled by default.
54
55 * Free software: Academic Free License version 3.0
56 * Documentation: https://galaxy-lib.readthedocs.org.
57 * Code: https://github.com/galaxyproject/galaxy-lib
58
59
60 .. _Galaxy: http://galaxyproject.org/
61 .. _GitHub: https://github.com/
62 .. _Travis CI: http://travis-ci.org/
63
64
65
66
67 History
68 -------
69
70 .. to_doc
71
72 ---------------------
73 0.13.0 (2020-07-30)
74 ---------------------
75
76 * Add experimental export to CWL 1.2 using new abstract Operation classes.
77
78 ---------------------
79 0.12.0 (2020-07-27)
80 ---------------------
81
82 * Drop support for Python 2 - to support next bullet.
83 * Update schema parser for recent changes to schema salad.
84
85 ---------------------
86 0.11.4 (2020-07-27)
87 ---------------------
88
89 * Added abstraction for uniform access to workflow outputs across formats.
90
91 ---------------------
92 0.11.3 (2020-07-23)
93 ---------------------
94
95 * Bug fixes for exporting newer input concepts from native to Format 2.
96 * Added abstraction for uniform access to workflow inputs across formats.
97
98 ---------------------
99 0.11.2 (2020-07-22)
100 ---------------------
101
102 * Rework cytoscape and helpers for reuse from Planemo.
103 * Rev markdown validator for and from latest Galaxy changes.
104
105 ---------------------
106 0.11.1 (2020-02-25)
107 ---------------------
108
109 * Bug fix for gxwf-lint invocation from setup.py installed script.
110
111 ---------------------
112 0.11.0 (2020-02-25)
113 ---------------------
114
115 * Validate Galaxy Markdown in workflow reports as part of linting.
116 * Improved null handling in native ga workflow linting.
117 * Enhancements to workflow linting from Python. Lint for lack of documentation,
118 tools using the test toolshed, and implement special linting for training
119 material workflows to ensure a tag matches the workflow topic.
120 * Add gxwf-viz script that produces a cytoscape visualization of a workflow.
121
122 ---------------------
123 0.10.1 (2019-12-07)
124 ---------------------
125
126 * Bug fix to handle outputs without labels in Format 2 - they
127 don't validate per se but they are important for testing in the
128 Galaxy framework.
129
130 ---------------------
131 0.10.0 (2019-12-06)
132 ---------------------
133
134 * Implement scheam, validation, linting (for Format 2 and .ga).
135 * Handle new reports field in Galaxy 19.09 workflows.
136 * Numerous fixes for conversiion to and from native workflows.
137 * Numerous new test cases.
138 * Implement Java project for valiating and linting both kinds of workflows.
139
140 ---------------------
141 0.9.0 (2019-07-08)
142 ---------------------
143
144 * Implement default values in gxformat2.
145
146 ---------------------
147 0.8.4 (2019-06-24)
148 ---------------------
149
150 * Fix output IDs of 0.
151
152 ---------------------
153 0.8.3 (2019-05-23)
154 ---------------------
155
156 * Implement set_columns PJA.
157
158 ---------------------
159 0.8.2 (2019-03-16)
160 ---------------------
161
162 * Allow another API return option for experimental tool creation API.
163
164 ---------------------
165 0.8.1 (2019-03-11)
166 ---------------------
167
168 * Implement change datatype PJA.
169
170 ---------------------
171 0.8.0 (2018-11-01)
172 ---------------------
173
174 * Implement experimental CWL-style step defaults (see Galaxy PR #6850).
175
176 ---------------------
177 0.7.1 (2018-10-09)
178 ---------------------
179
180 * Various small fixes for changes in 0.7.1.
181
182 ---------------------
183 0.7.0 (2018-10-08)
184 ---------------------
185
186 * Add some basic test cases.
187 * Allow ID-map style listing of steps.
188 * Ordered load (in addition to existing dump functionality) or ordering of steps in ID-map style variant works.
189 * Allow CWL-style $graph defs that can define multiple workflows in a single file.
190 * Initial work on de-duplicating subworkflow definitions on import.
191 * Fix position handling while exporting workflow.
192
193 ---------------------
194 0.6.1 (2018-10-01)
195 ---------------------
196
197 * Fix export of non-data parameters and implicit workflow connections.
198
199 ---------------------
200 0.6.0 (2018-10-01)
201 ---------------------
202
203 * Various fixes, allow id map style workflow input definitions.
204
205 ---------------------
206 0.5.0 (2018-10-01)
207 ---------------------
208
209 * More fixes for PJA, add the ``doc`` keyword to format 2 workflows to match CWL workflows. Map to and from native Galaxy workflows as annotations.
210
211 ---------------------
212 0.4.0 (2018-10-01)
213 ---------------------
214
215 * Fixes for exporting PJA when exporting workflows from native .ga to format 2.
216
217 ---------------------
218 0.3.2 (2018-10-01)
219 ---------------------
220
221 * Fixes for exporting workflow outputs from native .ga to format 2, support for modern map style output definitions like CWL 1.0.
222
223 ---------------------
224 0.3.1 (2018-10-01)
225 ---------------------
226
227 * Fixes for exporting subworkflows from native .ga to format 2.
228
229 ---------------------
230 0.3.0 (2018-09-30)
231 ---------------------
232
233 * More cwl style inputs, initial work on conversion from native workflows, various small fixes and tweaks.
234
235 ---------------------
236 0.2.0 (2018-02-21)
237 ---------------------
238
239 * Bring in latest Galaxy updates - Python 3 fixes, safe YAML usage, and more PJA implemented.
240
241 ---------------------
242 0.1.1 (2016-08-15)
243 ---------------------
244
245 * Fix one Python 3 incompatibility.
246
247 ---------------------
248 0.1.0 (2016-05-02)
249 ---------------------
250
251 * Initial version - code from Galaxy's test framework with changes
252 based on planemo testing.
253
254