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annotate planemo/lib/python3.7/site-packages/gxformat2-0.13.0.dist-info/METADATA @ 1:56ad4e20f292 draft

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"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:32:28 -0400
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1 Metadata-Version: 2.1
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2 Name: gxformat2
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3 Version: 0.13.0
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4 Summary: Galaxy Workflow Format 2 Descriptions
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5 Home-page: https://github.com/galaxyproject/gxformat2
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6 Author: Galaxy Project and Community
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7 Author-email: jmchilton@gmail.com
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8 License: AFL
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9 Keywords: galaxy
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10 Platform: UNKNOWN
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11 Classifier: Development Status :: 5 - Production/Stable
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12 Classifier: Intended Audience :: Developers
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13 Classifier: Environment :: Console
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14 Classifier: License :: OSI Approved :: Academic Free License (AFL)
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15 Classifier: Operating System :: POSIX
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16 Classifier: Topic :: Software Development
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17 Classifier: Topic :: Software Development :: Code Generators
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18 Classifier: Topic :: Software Development :: Testing
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19 Classifier: Natural Language :: English
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20 Classifier: Programming Language :: Python :: 3
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21 Classifier: Programming Language :: Python :: 3.5
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22 Classifier: Programming Language :: Python :: 3.6
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23 Classifier: Programming Language :: Python :: 3.7
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24 Classifier: Programming Language :: Python :: 3.8
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25 Requires-Dist: six (>=1.9.0)
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26 Requires-Dist: bioblend
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27 Requires-Dist: pyyaml
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29
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30 .. image:: https://readthedocs.org/projects/pip/badge/?version=latest
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31 :target: https://gxformat2.readthedocs.org
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32
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33 .. image:: https://badge.fury.io/py/gxformat2.svg
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34 :target: https://pypi.python.org/pypi/gxformat2/
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35
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36 .. image:: https://travis-ci.org/jmchilton/gxformat2.png?branch=master
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37 :target: https://travis-ci.org/jmchilton/gxformat2
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38
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39 .. image:: https://coveralls.io/repos/jmchilton/gxformat2/badge.svg?branch=master
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40 :target: https://coveralls.io/r/jmchilton/gxformat2?branch=master
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42
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43 This package defines a high-level Galaxy_ workflow description termed "Format
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44 2". At this point, these workflows are defined entirely client side and
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45 transcoded into traditional (or Format 1?) Galaxy workflows.
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46
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47 The traditional Galaxy workflow description is not meant to be concise and is
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48 neither readily human readable or human writable. Format 2 addresses all three
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49 of these limitations.
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50
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51 Format 2 workflow is a highly experimental format and will change rapidly in
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52 potentially backward incompatible ways until the code is merged into the
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53 Galaxy server and enabled by default.
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54
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55 * Free software: Academic Free License version 3.0
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56 * Documentation: https://galaxy-lib.readthedocs.org.
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57 * Code: https://github.com/galaxyproject/galaxy-lib
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59
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60 .. _Galaxy: http://galaxyproject.org/
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61 .. _GitHub: https://github.com/
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62 .. _Travis CI: http://travis-ci.org/
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67 History
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68 -------
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69
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70 .. to_doc
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71
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72 ---------------------
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73 0.13.0 (2020-07-30)
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74 ---------------------
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75
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76 * Add experimental export to CWL 1.2 using new abstract Operation classes.
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77
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78 ---------------------
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79 0.12.0 (2020-07-27)
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80 ---------------------
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81
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82 * Drop support for Python 2 - to support next bullet.
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83 * Update schema parser for recent changes to schema salad.
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84
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85 ---------------------
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86 0.11.4 (2020-07-27)
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87 ---------------------
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88
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89 * Added abstraction for uniform access to workflow outputs across formats.
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90
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91 ---------------------
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92 0.11.3 (2020-07-23)
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93 ---------------------
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94
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95 * Bug fixes for exporting newer input concepts from native to Format 2.
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96 * Added abstraction for uniform access to workflow inputs across formats.
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98 ---------------------
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99 0.11.2 (2020-07-22)
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100 ---------------------
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101
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102 * Rework cytoscape and helpers for reuse from Planemo.
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103 * Rev markdown validator for and from latest Galaxy changes.
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104
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105 ---------------------
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106 0.11.1 (2020-02-25)
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107 ---------------------
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108
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109 * Bug fix for gxwf-lint invocation from setup.py installed script.
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110
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111 ---------------------
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112 0.11.0 (2020-02-25)
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113 ---------------------
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114
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115 * Validate Galaxy Markdown in workflow reports as part of linting.
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116 * Improved null handling in native ga workflow linting.
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117 * Enhancements to workflow linting from Python. Lint for lack of documentation,
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118 tools using the test toolshed, and implement special linting for training
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119 material workflows to ensure a tag matches the workflow topic.
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120 * Add gxwf-viz script that produces a cytoscape visualization of a workflow.
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121
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122 ---------------------
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123 0.10.1 (2019-12-07)
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124 ---------------------
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125
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126 * Bug fix to handle outputs without labels in Format 2 - they
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127 don't validate per se but they are important for testing in the
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128 Galaxy framework.
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129
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130 ---------------------
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131 0.10.0 (2019-12-06)
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132 ---------------------
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133
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134 * Implement scheam, validation, linting (for Format 2 and .ga).
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135 * Handle new reports field in Galaxy 19.09 workflows.
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136 * Numerous fixes for conversiion to and from native workflows.
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137 * Numerous new test cases.
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138 * Implement Java project for valiating and linting both kinds of workflows.
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139
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140 ---------------------
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141 0.9.0 (2019-07-08)
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142 ---------------------
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143
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144 * Implement default values in gxformat2.
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145
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146 ---------------------
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147 0.8.4 (2019-06-24)
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148 ---------------------
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149
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150 * Fix output IDs of 0.
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151
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152 ---------------------
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153 0.8.3 (2019-05-23)
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154 ---------------------
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155
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156 * Implement set_columns PJA.
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157
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158 ---------------------
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159 0.8.2 (2019-03-16)
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160 ---------------------
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161
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162 * Allow another API return option for experimental tool creation API.
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163
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164 ---------------------
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165 0.8.1 (2019-03-11)
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166 ---------------------
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167
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168 * Implement change datatype PJA.
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169
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170 ---------------------
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171 0.8.0 (2018-11-01)
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172 ---------------------
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173
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174 * Implement experimental CWL-style step defaults (see Galaxy PR #6850).
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175
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176 ---------------------
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177 0.7.1 (2018-10-09)
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178 ---------------------
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179
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180 * Various small fixes for changes in 0.7.1.
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181
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182 ---------------------
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183 0.7.0 (2018-10-08)
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184 ---------------------
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185
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186 * Add some basic test cases.
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187 * Allow ID-map style listing of steps.
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188 * Ordered load (in addition to existing dump functionality) or ordering of steps in ID-map style variant works.
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189 * Allow CWL-style $graph defs that can define multiple workflows in a single file.
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190 * Initial work on de-duplicating subworkflow definitions on import.
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191 * Fix position handling while exporting workflow.
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192
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193 ---------------------
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194 0.6.1 (2018-10-01)
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195 ---------------------
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196
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197 * Fix export of non-data parameters and implicit workflow connections.
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198
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199 ---------------------
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200 0.6.0 (2018-10-01)
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201 ---------------------
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202
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203 * Various fixes, allow id map style workflow input definitions.
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204
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205 ---------------------
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206 0.5.0 (2018-10-01)
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207 ---------------------
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208
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209 * More fixes for PJA, add the ``doc`` keyword to format 2 workflows to match CWL workflows. Map to and from native Galaxy workflows as annotations.
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210
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211 ---------------------
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212 0.4.0 (2018-10-01)
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213 ---------------------
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214
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215 * Fixes for exporting PJA when exporting workflows from native .ga to format 2.
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216
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217 ---------------------
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218 0.3.2 (2018-10-01)
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219 ---------------------
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220
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221 * Fixes for exporting workflow outputs from native .ga to format 2, support for modern map style output definitions like CWL 1.0.
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222
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223 ---------------------
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224 0.3.1 (2018-10-01)
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225 ---------------------
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226
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227 * Fixes for exporting subworkflows from native .ga to format 2.
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228
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229 ---------------------
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230 0.3.0 (2018-09-30)
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231 ---------------------
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232
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233 * More cwl style inputs, initial work on conversion from native workflows, various small fixes and tweaks.
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234
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235 ---------------------
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236 0.2.0 (2018-02-21)
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237 ---------------------
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238
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239 * Bring in latest Galaxy updates - Python 3 fixes, safe YAML usage, and more PJA implemented.
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240
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241 ---------------------
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242 0.1.1 (2016-08-15)
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243 ---------------------
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244
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245 * Fix one Python 3 incompatibility.
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246
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247 ---------------------
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248 0.1.0 (2016-05-02)
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249 ---------------------
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250
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251 * Initial version - code from Galaxy's test framework with changes
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252 based on planemo testing.
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253
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254