Mercurial > repos > guerler > springsuite
comparison planemo/lib/python3.7/site-packages/cwltool/tests/test_http_input.py @ 0:d30785e31577 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
| author | guerler |
|---|---|
| date | Fri, 31 Jul 2020 00:18:57 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:d30785e31577 |
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| 1 import os | |
| 2 import tempfile | |
| 3 | |
| 4 from cwltool.pathmapper import PathMapper | |
| 5 | |
| 6 | |
| 7 def test_http_path_mapping(): | |
| 8 class SubPathMapper(PathMapper): | |
| 9 def __init__(self, referenced_files, basedir, stagedir): | |
| 10 super(SubPathMapper, self).__init__(referenced_files, basedir, stagedir) | |
| 11 input_file_path = "https://raw.githubusercontent.com/common-workflow-language/cwltool/master/tests/2.fasta" | |
| 12 tempdir = tempfile.mkdtemp() | |
| 13 base_file = [{ | |
| 14 "class": "File", | |
| 15 "location": "https://raw.githubusercontent.com/common-workflow-language/cwltool/master/tests/2.fasta", | |
| 16 "basename": "chr20.fa" | |
| 17 }] | |
| 18 pathmap = SubPathMapper(base_file, os.getcwd(), tempdir)._pathmap | |
| 19 | |
| 20 assert input_file_path in pathmap | |
| 21 assert os.path.exists(pathmap[input_file_path].resolved) | |
| 22 | |
| 23 with open(pathmap[input_file_path].resolved) as file: | |
| 24 contents = file.read() | |
| 25 | |
| 26 assert ">Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;" in contents |