diff planemo/lib/python3.7/site-packages/cwltool/tests/test_http_input.py @ 0:d30785e31577 draft

"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400 (2020-07-31)
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children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/planemo/lib/python3.7/site-packages/cwltool/tests/test_http_input.py	Fri Jul 31 00:18:57 2020 -0400
@@ -0,0 +1,26 @@
+import os
+import tempfile
+
+from cwltool.pathmapper import PathMapper
+
+
+def test_http_path_mapping():
+    class SubPathMapper(PathMapper):
+        def __init__(self, referenced_files, basedir, stagedir):
+            super(SubPathMapper, self).__init__(referenced_files, basedir, stagedir)
+    input_file_path = "https://raw.githubusercontent.com/common-workflow-language/cwltool/master/tests/2.fasta"
+    tempdir = tempfile.mkdtemp()
+    base_file = [{
+        "class": "File",
+        "location": "https://raw.githubusercontent.com/common-workflow-language/cwltool/master/tests/2.fasta",
+        "basename": "chr20.fa"
+    }]
+    pathmap = SubPathMapper(base_file, os.getcwd(), tempdir)._pathmap
+
+    assert input_file_path in pathmap
+    assert os.path.exists(pathmap[input_file_path].resolved)
+
+    with open(pathmap[input_file_path].resolved) as file:
+        contents = file.read()
+
+    assert ">Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;" in contents