diff planemo/lib/python3.7/site-packages/cwltool/tests/test_trs.py @ 0:d30785e31577 draft

"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author guerler
date Fri, 31 Jul 2020 00:18:57 -0400 (2020-07-31)
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children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/planemo/lib/python3.7/site-packages/cwltool/tests/test_trs.py	Fri Jul 31 00:18:57 2020 -0400
@@ -0,0 +1,76 @@
+from __future__ import absolute_import
+
+import mock
+
+from cwltool.main import main
+from .util import get_data
+
+def mocked_requests_head(*args):
+
+    class MockResponse:
+        def __init__(self, json_data, status_code, raise_for_status=None):
+            self.json_data = json_data
+            self.status_code = status_code
+            self.raise_for_status = mock.Mock()
+            self.raise_for_status.side_effect = raise_for_status
+
+        def json(self):
+            return self.json_data
+
+    return MockResponse(None, 200)
+
+
+def mocked_requests_get(*args):
+
+    class MockResponse:
+        def __init__(self, json_data, status_code, raise_for_status=None):
+            self.json_data = json_data
+            self.text = json_data
+            self.status_code = status_code
+            self.raise_for_status = mock.Mock()
+            self.raise_for_status.side_effect = raise_for_status
+
+        def json(self):
+            return self.json_data
+
+    if args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/CWL/files':
+        return MockResponse(
+            [{"file_type": "CONTAINERFILE", "path": "Dockerfile"}, {"file_type": "PRIMARY_DESCRIPTOR", "path": "Dockstore.cwl"},
+             {"file_type": "TEST_FILE", "path": "test.json"}], 200)
+    elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/plain-CWL/descriptor/Dockstore.cwl':
+        string = open(get_data("tests/trs/Dockstore.cwl"), "r").read()
+        return MockResponse(string, 200)
+    elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-tool.cwl':
+        string = open(get_data("tests/trs/md5sum-tool.cwl"), "r").read()
+        return MockResponse(string, 200)
+    elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-workflow.cwl':
+        string = open(get_data("tests/trs/md5sum-workflow.cwl"), "r").read()
+        return MockResponse(string, 200)
+    elif args[
+        0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/CWL/files':
+        return MockResponse(
+            [{"file_type": "TEST_FILE", "path": "md5sum-input-cwl.json"}, {"file_type": "SECONDARY_DESCRIPTOR", "path": "md5sum-tool.cwl"},
+             {"file_type": "PRIMARY_DESCRIPTOR", "path": "md5sum-workflow.cwl"}], 200)
+
+    print ("A mocked call to TRS missed, target was %s", args[0])
+    return MockResponse(None, 404)
+
+
+@mock.patch('requests.Session.head', side_effect=mocked_requests_head)
+@mock.patch('requests.Session.get', side_effect=mocked_requests_get)
+def test_tool_trs_template(mock_head, mock_get):
+    params = ["--make-template", r"quay.io/briandoconnor/dockstore-tool-md5sum:1.0.4"]
+    return_value = main(params)
+    mock_head.assert_called()
+    mock_get.assert_called()
+    assert return_value == 0
+
+
+@mock.patch('requests.Session.head', side_effect=mocked_requests_head)
+@mock.patch('requests.Session.get', side_effect=mocked_requests_get)
+def test_workflow_trs_template(mock_head, mock_get):
+    params = ["--make-template", r"#workflow/github.com/dockstore-testing/md5sum-checker:develop"]
+    return_value = main(params)
+    mock_head.assert_called()
+    mock_get.assert_called()
+    assert return_value == 0