Mercurial > repos > guerler > springsuite
view planemo/lib/python3.7/site-packages/cwltool/tests/test_trs.py @ 0:d30785e31577 draft
"planemo upload commit 6eee67778febed82ddd413c3ca40b3183a3898f1"
author | guerler |
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date | Fri, 31 Jul 2020 00:18:57 -0400 |
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from __future__ import absolute_import import mock from cwltool.main import main from .util import get_data def mocked_requests_head(*args): class MockResponse: def __init__(self, json_data, status_code, raise_for_status=None): self.json_data = json_data self.status_code = status_code self.raise_for_status = mock.Mock() self.raise_for_status.side_effect = raise_for_status def json(self): return self.json_data return MockResponse(None, 200) def mocked_requests_get(*args): class MockResponse: def __init__(self, json_data, status_code, raise_for_status=None): self.json_data = json_data self.text = json_data self.status_code = status_code self.raise_for_status = mock.Mock() self.raise_for_status.side_effect = raise_for_status def json(self): return self.json_data if args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/CWL/files': return MockResponse( [{"file_type": "CONTAINERFILE", "path": "Dockerfile"}, {"file_type": "PRIMARY_DESCRIPTOR", "path": "Dockstore.cwl"}, {"file_type": "TEST_FILE", "path": "test.json"}], 200) elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/quay.io%2Fbriandoconnor%2Fdockstore-tool-md5sum/versions/1.0.4/plain-CWL/descriptor/Dockstore.cwl': string = open(get_data("tests/trs/Dockstore.cwl"), "r").read() return MockResponse(string, 200) elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-tool.cwl': string = open(get_data("tests/trs/md5sum-tool.cwl"), "r").read() return MockResponse(string, 200) elif args[0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/plain-CWL/descriptor/md5sum-workflow.cwl': string = open(get_data("tests/trs/md5sum-workflow.cwl"), "r").read() return MockResponse(string, 200) elif args[ 0] == 'https://dockstore.org/api/api/ga4gh/v2/tools/%23workflow%2Fgithub.com%2Fdockstore-testing%2Fmd5sum-checker/versions/develop/CWL/files': return MockResponse( [{"file_type": "TEST_FILE", "path": "md5sum-input-cwl.json"}, {"file_type": "SECONDARY_DESCRIPTOR", "path": "md5sum-tool.cwl"}, {"file_type": "PRIMARY_DESCRIPTOR", "path": "md5sum-workflow.cwl"}], 200) print ("A mocked call to TRS missed, target was %s", args[0]) return MockResponse(None, 404) @mock.patch('requests.Session.head', side_effect=mocked_requests_head) @mock.patch('requests.Session.get', side_effect=mocked_requests_get) def test_tool_trs_template(mock_head, mock_get): params = ["--make-template", r"quay.io/briandoconnor/dockstore-tool-md5sum:1.0.4"] return_value = main(params) mock_head.assert_called() mock_get.assert_called() assert return_value == 0 @mock.patch('requests.Session.head', side_effect=mocked_requests_head) @mock.patch('requests.Session.get', side_effect=mocked_requests_get) def test_workflow_trs_template(mock_head, mock_get): params = ["--make-template", r"#workflow/github.com/dockstore-testing/md5sum-checker:develop"] return_value = main(params) mock_head.assert_called() mock_get.assert_called() assert return_value == 0