Mercurial > repos > guru-ananda > rhmm

diff hmm/hmm.xml @ 1:38f5cd46ffd3 draft default tip

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Uploaded updated tool definition.
author devteam
date Fri, 23 Jan 2015 12:48:22 -0500
parents e090cf6dd3f5
children
line wrap: on
line diff
--- a/hmm/hmm.xml	Thu Jan 22 10:40:18 2015 -0500
+++ b/hmm/hmm.xml	Fri Jan 23 12:48:22 2015 -0500
@@ -1,7 +1,11 @@
 <tool id="hmm_1" name="Fit HMM " version="1.0.0">
   <description>on numeric data</description>
-  <command interpreter="bash">\$R_SCRIPT_PATH/r_wrapper.sh $script_file</command>
-
+   <requirements>
+      <requirement type="set_environment">R_SCRIPT_PATH</requirement>
+      <requirement type="package" version="2.15.0">R</requirement>
+      <requirement type="package" version="1.5.0">RHmm</requirement>
+  </requirements>
+  <command interpreter="bash">r_wrapper.sh $script_file</command>
   <inputs>
     <param name="input" type="data" format="tabular" label="Dataset"/>
     <param name="var_cols" label="Select columns containing observations " type="data_column" data_ref="input" numerical="True" multiple="true" >
@@ -122,10 +126,6 @@
     <data format="input" name="out_file2" />
   </outputs>
 
-   <requirements>
-    	<requirement type="set_environment">R_SCRIPT_PATH</requirement>
-    	<requirement type="package" version="2.15.0">R</requirement>
-  </requirements>
   
 <help>