Mercurial > repos > guru-ananda > rhmm
changeset 1:38f5cd46ffd3 draft default tip
Uploaded updated tool definition.
| author | devteam |
|---|---|
| date | Fri, 23 Jan 2015 12:48:22 -0500 |
| parents | e090cf6dd3f5 |
| children | |
| files | hmm/hmm.xml hmm/tool_dependencies.xml |
| diffstat | 2 files changed, 9 insertions(+), 6 deletions(-) [+] |
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--- a/hmm/hmm.xml Thu Jan 22 10:40:18 2015 -0500 +++ b/hmm/hmm.xml Fri Jan 23 12:48:22 2015 -0500 @@ -1,7 +1,11 @@ <tool id="hmm_1" name="Fit HMM " version="1.0.0"> <description>on numeric data</description> - <command interpreter="bash">\$R_SCRIPT_PATH/r_wrapper.sh $script_file</command> - + <requirements> + <requirement type="set_environment">R_SCRIPT_PATH</requirement> + <requirement type="package" version="2.15.0">R</requirement> + <requirement type="package" version="1.5.0">RHmm</requirement> + </requirements> + <command interpreter="bash">r_wrapper.sh $script_file</command> <inputs> <param name="input" type="data" format="tabular" label="Dataset"/> <param name="var_cols" label="Select columns containing observations " type="data_column" data_ref="input" numerical="True" multiple="true" > @@ -122,10 +126,6 @@ <data format="input" name="out_file2" /> </outputs> - <requirements> - <requirement type="set_environment">R_SCRIPT_PATH</requirement> - <requirement type="package" version="2.15.0">R</requirement> - </requirements> <help>
--- a/hmm/tool_dependencies.xml Thu Jan 22 10:40:18 2015 -0500 +++ b/hmm/tool_dependencies.xml Fri Jan 23 12:48:22 2015 -0500 @@ -6,4 +6,7 @@ <package name="R" version="2.15.0"> <repository changeset_revision="6c34eaa82fed" name="package_r_2_15_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> + <package name="RHmm" version="1.5.0"> + <repository changeset_revision="f3e7ca9e773c" name="package_rhmm_1_5_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> </tool_dependency>