Mercurial > repos > hepcat72 > extractsplitreads_bwamem

changeset 1:a20ac5d90c16 draft default tip

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planemo upload commit 0066847e0ac19632c3091ac3148069de3bb3855f-dirty
author hepcat72
date Fri, 10 Aug 2018 13:15:57 -0400
parents 839c219ab0aa
children
files extractSplitReads_BwaMem.xml
diffstat 1 files changed, 1 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/extractSplitReads_BwaMem.xml	Fri Aug 10 11:46:23 2018 -0400
+++ b/extractSplitReads_BwaMem.xml	Fri Aug 10 13:15:57 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="extractsplitreads_bwamem"
+<tool id="extractSplitReads_BwaMem"
       name="Extract Split Reads"
       version="0.1.0">
 
@@ -8,8 +8,6 @@
         <requirement type="package" version="0.2.14a">lumpy-sv</requirement>
     </requirements>
 
-    <!-- Not sure yet how to call the command if the lumpy-sv package in bioconda doesn't put the script in an executable location on PATH -->
-
     <version_command>extractSplitReads_BwaMem | grep ^extractSplitReads_BwaMem | cut -d v -f 2</version_command>
 
     <command detect_errors="aggressive">