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comparison fastx_nucleotides_distribution_line.xml @ 0:78a7d28f2a15 draft

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author idot
date Wed, 10 Jul 2013 06:13:48 -0400
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1 <tool id="cshl_fastx_nucleotides_distribution_line_plot" name="Draw nucleotides distribution line chart">
2 <command>
3 fastx_nucleotide_distribution_line_graph.sh -i '$input' -o '$output'
4 </command>
5
6 <inputs>
7 <param format="txt" name="input" type="data" label="Statistics Text File (output of 'FASTX Statistics' tool)" />
8 </inputs>
9
10 <outputs>
11 <data format="png" name="output" metadata_source="input"
12 />
13 </outputs>
14 <help>
15
16 **What it does**
17
18 Creates a line and points graph for the nucleotide distribution in the Solexa library.
19
20 .. class:: infomark
21
22 **TIP:** Use the **FASTQ Statistics** tool to generate the report file needed for this tool.
23
24 -----
25
26 **Output Examples**
27
28 .. image:: ../static/fastx_icons/fastq_nucleotides_distribution_line_graph.png
29
30 ------
31
32 This tool was created by Oliver Tam, based on `FASTX-toolkit`__ by Assaf Gordon.
33
34 .. __: http://hannonlab.cshl.edu/fastx_toolkit/
35
36 </help>
37 </tool>
38 <!-- FASTQ-Nucleotides-Distribution-Line is part of the FASTX-toolkit, by A.Gordon (gordon@cshl.edu) -->