view fastx_nucleotides_distribution_line.xml @ 0:78a7d28f2a15 draft

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author idot
date Wed, 10 Jul 2013 06:13:48 -0400
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<tool id="cshl_fastx_nucleotides_distribution_line_plot" name="Draw nucleotides distribution line chart">
	<command>
	  fastx_nucleotide_distribution_line_graph.sh -i '$input' -o '$output'
	</command>
	
	<inputs>
		<param format="txt" name="input" type="data" label="Statistics Text File (output of 'FASTX Statistics' tool)" />
	</inputs>
	
	<outputs>
		<data format="png" name="output" metadata_source="input" 
		/>
	</outputs>
<help>

**What it does**

Creates a line and points graph for the nucleotide distribution in the Solexa library.

.. class:: infomark

**TIP:** Use the **FASTQ Statistics** tool to generate the report file needed for this tool.

-----

**Output Examples**

.. image:: ../static/fastx_icons/fastq_nucleotides_distribution_line_graph.png

------

This tool was created by Oliver Tam, based on `FASTX-toolkit`__ by Assaf Gordon.

 .. __: http://hannonlab.cshl.edu/fastx_toolkit/
 
</help>
</tool>
<!-- FASTQ-Nucleotides-Distribution-Line is part of the FASTX-toolkit, by A.Gordon (gordon@cshl.edu) -->