Mercurial > repos > idot > fastx_toolkit2
comparison fastx_nucleotides_distribution_line.xml @ 0:78a7d28f2a15 draft
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author | idot |
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date | Wed, 10 Jul 2013 06:13:48 -0400 |
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-1:000000000000 | 0:78a7d28f2a15 |
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1 <tool id="cshl_fastx_nucleotides_distribution_line_plot" name="Draw nucleotides distribution line chart"> | |
2 <command> | |
3 fastx_nucleotide_distribution_line_graph.sh -i '$input' -o '$output' | |
4 </command> | |
5 | |
6 <inputs> | |
7 <param format="txt" name="input" type="data" label="Statistics Text File (output of 'FASTX Statistics' tool)" /> | |
8 </inputs> | |
9 | |
10 <outputs> | |
11 <data format="png" name="output" metadata_source="input" | |
12 /> | |
13 </outputs> | |
14 <help> | |
15 | |
16 **What it does** | |
17 | |
18 Creates a line and points graph for the nucleotide distribution in the Solexa library. | |
19 | |
20 .. class:: infomark | |
21 | |
22 **TIP:** Use the **FASTQ Statistics** tool to generate the report file needed for this tool. | |
23 | |
24 ----- | |
25 | |
26 **Output Examples** | |
27 | |
28 .. image:: ../static/fastx_icons/fastq_nucleotides_distribution_line_graph.png | |
29 | |
30 ------ | |
31 | |
32 This tool was created by Oliver Tam, based on `FASTX-toolkit`__ by Assaf Gordon. | |
33 | |
34 .. __: http://hannonlab.cshl.edu/fastx_toolkit/ | |
35 | |
36 </help> | |
37 </tool> | |
38 <!-- FASTQ-Nucleotides-Distribution-Line is part of the FASTX-toolkit, by A.Gordon (gordon@cshl.edu) --> |