Mercurial > repos > ieguinoa > data_manager_fetch_gff
diff data_manager_conf.xml @ 0:ac4fde07eaed draft
Uploaded
| author | ieguinoa |
|---|---|
| date | Mon, 09 Jul 2018 11:58:50 -0400 |
| parents | |
| children | 955a8d483fa3 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Mon Jul 09 11:58:50 2018 -0400 @@ -0,0 +1,47 @@ +<data_manager tool_file="data_manager/data_manager_fetch_gff.xml" id="data_manager_fetch_gff"> + <data_table name="all_gff"> + <output> + <column name="value" /> + <column name="dbkey" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="file"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gff/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gff/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="representative_gff"> + <output> + <column name="value" /> + <column name="dbkey" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="file"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/representative_gff/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/representative_gff/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + + <data_table name="__dbkeys__"> + <output> + <column name="value" /> + <column name="name" /> + <column name="len_path" output_ref="out_file"> + <move type="file"> + <source>${len_path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager>