Mercurial > repos > ieguinoa > data_manager_fetch_gff
view data_manager_conf.xml @ 0:ac4fde07eaed draft
Uploaded
author | ieguinoa |
---|---|
date | Mon, 09 Jul 2018 11:58:50 -0400 |
parents | |
children | 955a8d483fa3 |
line wrap: on
line source
<data_manager tool_file="data_manager/data_manager_fetch_gff.xml" id="data_manager_fetch_gff"> <data_table name="all_gff"> <output> <column name="value" /> <column name="dbkey" /> <column name="name" /> <column name="path" output_ref="out_file"> <move type="file"> <source>${path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gff/${path}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gff/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="representative_gff"> <output> <column name="value" /> <column name="dbkey" /> <column name="name" /> <column name="path" output_ref="out_file"> <move type="file"> <source>${path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/representative_gff/${path}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/representative_gff/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="__dbkeys__"> <output> <column name="value" /> <column name="name" /> <column name="len_path" output_ref="out_file"> <move type="file"> <source>${len_path}</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager>