Mercurial > repos > ieguinoa > data_manager_salmon_index_builder
comparison .shed.yml @ 1:c5dea2080109 draft
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| author | ieguinoa |
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| date | Tue, 14 Aug 2018 11:19:49 -0400 |
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| 0:6cd60ba8a842 | 1:c5dea2080109 |
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| 1 categories: | |
| 2 - Data Managers | |
| 3 description: Pre-generate indexes for Salmon | |
| 4 homepage_url: https://github.com/COMBINE-lab/salmon | |
| 5 long_description: | | |
| 6 Salmon is a wicked-fast program to produce a highly-accurate, | |
| 7 transcript-level quantification estimates from RNA-seq data. | |
| 8 Salmon achieves is accuracy and speed via a number of different innovations, | |
| 9 including the use of quasi-mapping (accurate but fast-to-compute proxies for traditional read alignments), | |
| 10 and massively-parallel stochastic collapsed variational inference. | |
| 11 The result is a versatile tool that fits nicely into many differnt pipelines. | |
| 12 For example, you can choose to make use of our quasi-mapping algorithm by providing | |
| 13 Salmon with raw sequencing reads, or, if it is more convenient, you can provide | |
| 14 Salmon with regular alignments (e.g. an unsorted BAM file produced with your favorite aligner), | |
| 15 and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment. | |
| 16 name: data_manager_salmon_index_builder | |
| 17 owner: iuc | |
| 18 remote_repository_url: https://github.com/ieguinoa/data_manager_salmon_index_builder | |
| 19 type: unrestricted |