Mercurial > repos > ieguinoa > data_manager_salmon_index_builder

diff data_manager_conf.xml @ 5:3888ec1918d0 draft

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author ieguinoa
date Thu, 03 Jan 2019 10:51:18 -0500
parents c5dea2080109
children d22f69a2e80e
line wrap: on
line diff
--- a/data_manager_conf.xml	Mon Nov 26 10:53:58 2018 -0500
+++ b/data_manager_conf.xml	Thu Jan 03 10:51:18 2019 -0500
@@ -9,9 +9,9 @@
                 <column name="path" output_ref="out_file" >
                     <move type="directory" relativize_symlinks="True">
                         <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/salmon_index/${value}</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/salmon_index/${path}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/salmon_index/${value}/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/salmon_index/${path}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>