annotate data_manager_conf.xml @ 5:3888ec1918d0 draft

Uploaded
author ieguinoa
date Thu, 03 Jan 2019 10:51:18 -0500
parents c5dea2080109
children d22f69a2e80e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
1 <?xml version="1.0"?>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
2 <data_managers>
1
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
3 <data_manager tool_file="data_manager/salmon_index_builder.xml" id="salmon_index_builder" version="0.1">
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
4 <data_table name="salmon_indexes">
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
5 <output>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
6 <column name="value" />
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
7 <column name="dbkey" />
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
8 <column name="name" />
1
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
9 <column name="path" output_ref="out_file" >
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
10 <move type="directory" relativize_symlinks="True">
c5dea2080109 Uploaded
ieguinoa
parents: 0
diff changeset
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
5
3888ec1918d0 Uploaded
ieguinoa
parents: 1
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/salmon_index/${path}</target>
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
13 </move>
5
3888ec1918d0 Uploaded
ieguinoa
parents: 1
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/salmon_index/${path}</value_translation>
0
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
16 </column>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
17 </output>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
18 </data_table>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
19 </data_manager>
6cd60ba8a842 Uploaded
ieguinoa
parents:
diff changeset
20 </data_managers>