Mercurial > repos > ieguinoa > data_manager_salmon_index_builder
diff data_manager_conf.xml @ 0:6cd60ba8a842 draft
Uploaded
| author | ieguinoa |
|---|---|
| date | Tue, 14 Aug 2018 11:14:52 -0400 |
| parents | |
| children | c5dea2080109 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Tue Aug 14 11:14:52 2018 -0400 @@ -0,0 +1,35 @@ +<?xml version="1.0"?> +<data_managers> +<data_manager tool_file="data_manager/data_manager_fetch_gff.xml" id="data_manager_fetch_gff"> + <data_table name="all_gff"> + <output> + <column name="value" /> + <column name="dbkey" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="file"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gff/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gff/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="representative_gff"> + <output> + <column name="value" /> + <column name="dbkey" /> + <column name="name" /> + <column name="path" output_ref="out_file"> + <move type="file"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/representative_gff/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/representative_gff/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers>