Mercurial > repos > ieguinoa > data_manager_salmon_index_builder

changeset 2:f7d9182bdcab draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author ieguinoa
date Fri, 19 Oct 2018 09:53:44 -0400
parents c5dea2080109
children 3d12fd3b7cae
files data_manager/salmon_index_builder.py
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/salmon_index_builder.py	Tue Aug 14 11:19:49 2018 -0400
+++ b/data_manager/salmon_index_builder.py	Fri Oct 19 09:53:44 2018 -0400
@@ -30,6 +30,7 @@
     target_directory = params[ 'output_data' ][0]['extra_files_path']
     if not os.path.exists( target_directory ):
         os.mkdir( target_directory )
+    args = [ 'salmon', 'index' ]
     if options.kmer_size != '':
         args.append('-k')
         args.append(options.kmer_size)