Mercurial > repos > ieguinoa > ena_webin_cli

comparison test-data/receipt_sample.txt @ 3:7d751b5943b0 draft default tip

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author ieguinoa
date Tue, 22 Feb 2022 11:03:34 +0000
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2:1ecd8ce07db4 3:7d751b5943b0
1 YAML -------------
2 ENA_experiment:
3 0:
4 alias: exp_test_alias_001
5 design_description: Lot's of coffe and magic
6 insert_size: 250.0
7 instrument_model: NextSeq 500
8 library_construction_protocol: Illumina COVIDSeq Test Kit
9 library_layout: PAIRED
10 library_name: Cov51
11 library_selection: RT-PCR
12 library_source: VIRAL RNA
13 library_strategy: AMPLICON
14 platform: ILLUMINA
15 sample_alias: sample_alias_001
16 study_alias: study_alias_001
17 title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
18 1:
19 alias: exp_test_alias_002
20 design_description: Lot's of coffe and magic
21 insert_size: 250.0
22 instrument_model: NextSeq 500
23 library_construction_protocol: Illumina COVIDSeq Test Kit
24 library_layout: PAIRED
25 library_name: Cov51
26 library_selection: RT-PCR
27 library_source: VIRAL RNA
28 library_strategy: AMPLICON
29 platform: ILLUMINA
30 sample_alias: phiX2
31 study_alias: study_alias_001
32 title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
33 ENA_run:
34 2:
35 alias: run_alias_001
36 experiment_alias: exp_test_alias_001
37 file_format: FASTQ
38 file_name: run001.fastq.gz
39 ENA_sample:
40 2:
41 alias: sample_alias_001
42 collecting institution: Umbrella Corp.
43 collection date: '2021-05-03'
44 collector name: "John Doe"
45 definition for seropositive sample: ''
46 2:
47 alias: phiX2
48 collecting institution: Umbrella Corp.
49 collection date: '2021-05-03'
50 collector name: "John Doe"
51 definition for seropositive sample: ''
52 ENA_study:
53 2:
54 alias: study_alias_001
55 study_abstract: "Help"
56 study_type: Whole Genome Sequencing
57 title: Whole genome sequencing of SARS-CoV-2
58 YAML -------------
59
60 Printing receipt to ./receipt.xml
61
62 Submission was done successfully
63
64 Study accession details:
65 study_alias_001 FAKE0001 2011-01-16T10:52:06.497+01:00 added
66
67 Sample accession details:
68 sample_alias_001 FAKESAMP001 2011-01-16T10:52:06.497+01:00 added
69 phiX2 FAKESAMP002 2011-01-16T10:52:06.497+01:00 added
70
71 Saving updates in new tsv tables::
72 save updates in ./submission_files/studies_updated.tsv
73 save updates in ./submission_files/samples_updated.tsv
74 save updates in ./submission_files/experiments_updated.tsv
75 save updates in ./submission_files/runs_updated.tsv
76 action_option add