Mercurial > repos > ieguinoa > ena_webin_cli
diff test-data/receipt_sample.txt @ 3:7d751b5943b0 draft default tip
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author | ieguinoa |
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date | Tue, 22 Feb 2022 11:03:34 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/receipt_sample.txt Tue Feb 22 11:03:34 2022 +0000 @@ -0,0 +1,76 @@ +YAML ------------- +ENA_experiment: + 0: + alias: exp_test_alias_001 + design_description: Lot's of coffe and magic + insert_size: 250.0 + instrument_model: NextSeq 500 + library_construction_protocol: Illumina COVIDSeq Test Kit + library_layout: PAIRED + library_name: Cov51 + library_selection: RT-PCR + library_source: VIRAL RNA + library_strategy: AMPLICON + platform: ILLUMINA + sample_alias: sample_alias_001 + study_alias: study_alias_001 + title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test + 1: + alias: exp_test_alias_002 + design_description: Lot's of coffe and magic + insert_size: 250.0 + instrument_model: NextSeq 500 + library_construction_protocol: Illumina COVIDSeq Test Kit + library_layout: PAIRED + library_name: Cov51 + library_selection: RT-PCR + library_source: VIRAL RNA + library_strategy: AMPLICON + platform: ILLUMINA + sample_alias: phiX2 + study_alias: study_alias_001 + title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test +ENA_run: + 2: + alias: run_alias_001 + experiment_alias: exp_test_alias_001 + file_format: FASTQ + file_name: run001.fastq.gz +ENA_sample: + 2: + alias: sample_alias_001 + collecting institution: Umbrella Corp. + collection date: '2021-05-03' + collector name: "John Doe" + definition for seropositive sample: '' + 2: + alias: phiX2 + collecting institution: Umbrella Corp. + collection date: '2021-05-03' + collector name: "John Doe" + definition for seropositive sample: '' +ENA_study: + 2: + alias: study_alias_001 + study_abstract: "Help" + study_type: Whole Genome Sequencing + title: Whole genome sequencing of SARS-CoV-2 +YAML ------------- + +Printing receipt to ./receipt.xml + +Submission was done successfully + +Study accession details: +study_alias_001 FAKE0001 2011-01-16T10:52:06.497+01:00 added + +Sample accession details: +sample_alias_001 FAKESAMP001 2011-01-16T10:52:06.497+01:00 added +phiX2 FAKESAMP002 2011-01-16T10:52:06.497+01:00 added + +Saving updates in new tsv tables:: +save updates in ./submission_files/studies_updated.tsv +save updates in ./submission_files/samples_updated.tsv +save updates in ./submission_files/experiments_updated.tsv +save updates in ./submission_files/runs_updated.tsv +action_option add