Mercurial > repos > ieguinoa > ena_webin_cli
changeset 1:f24eb2f2cb0c draft
Uploaded
| author | ieguinoa |
|---|---|
| date | Tue, 18 May 2021 21:00:09 +0000 |
| parents | e25357392813 |
| children | 1ecd8ce07db4 |
| files | ena_consensus_submit.xml |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/ena_consensus_submit.xml Tue May 18 16:30:52 2021 +0000 +++ b/ena_consensus_submit.xml Tue May 18 21:00:09 2021 +0000 @@ -40,7 +40,9 @@ echo -e "ASSEMBLY_TYPE\t$assembly_type" >> $manifest_base; echo -e "COVERAGE\t$coverage" >> $manifest_base; echo -e "PROGRAM\t$assembly_program" >> $manifest_base; -echo -e "MINGAPLENGTH\t$min_gap_length" >> $manifest_base; +#if $min_gap_length: + echo -e "MINGAPLENGTH\t$min_gap_length" >> $manifest_base; +#end if echo -e "MOLECULETYPE\t$molecule_type" >> $manifest_base; #if $metadata_file_or_form.metadata_format == "file": @@ -122,7 +124,6 @@ <option value="viral cRNA">viral cRNA</option> <option value="genomic DNA">genomic DNA</option> </param> - <param name="min_gap_length" type="text" optional="True" label="Minimum gap length"/> <param name="coverage" type="float" optional="False" value="10000" label="Coverage"/> <conditional name="metadata_file_or_form"> <param name="metadata_format" type="select" label="Select the method to load study and sample metadata"> @@ -141,6 +142,7 @@ <param name="center_name" type="text" optional="False" label="Center name"/> </when> </conditional> + <param name="min_gap_length" type="text" optional="True" label="Minimum gap length (optional)"/> </inputs> <outputs> <collection name="generated_manifests" type="list" label="Generated manifests">