Mercurial > repos > imgteam > 2d_auto_threshold

changeset 4:3df9f0a4bf34 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_auto_threshold/ commit 6b687746bdb3d5d1fb11ecffd6dd1bf42dc2c38d
author imgteam
date Fri, 10 Nov 2023 14:23:07 +0000
parents 0c777d708acc
children 7db4fc31dbee
files auto_threshold.xml
diffstat 1 files changed, 22 insertions(+), 15 deletions(-) [+]
line wrap: on
line diff
--- a/auto_threshold.xml	Sat Feb 19 15:17:40 2022 +0000
+++ b/auto_threshold.xml	Fri Nov 10 14:23:07 2023 +0000
@@ -1,20 +1,27 @@
-<tool id="ip_threshold" name="Auto Threshold" version="0.0.5" profile="20.05">
-   <description>applies a standard thresholding algorithm to an image</description>
-   <requirements> 
+<tool id="ip_threshold" name="Threshold image" version="0.0.5-2" profile="20.05">
+    <description>with scikit-image</description>
+    <edam_operations>
+        <edam_operation>operation_3443</edam_operation>
+    </edam_operations>
+    <xrefs>
+        <xref type="bio.tools">scikit-image</xref>
+        <xref type="biii">scikit-image</xref>
+    </xrefs>
+    <requirements> 
         <requirement type="package" version="0.18.1">scikit-image</requirement>
         <requirement type="package" version="2020.10.1">tifffile</requirement>
-   </requirements>
-   <command detect_errors="aggressive">
-   <![CDATA[
-   python '$__tool_directory__/auto_threshold.py'
-   '$input'
-   ./out.tif
-   '$th_method'
-   '$block_size'
-   '$dark_bg'
-   ]]>
-   </command>
-   <inputs>
+    </requirements>
+    <command detect_errors="aggressive">
+    <![CDATA[
+    python '$__tool_directory__/auto_threshold.py'
+    '$input'
+    ./out.tif
+    '$th_method'
+    '$block_size'
+    '$dark_bg'
+    ]]>
+    </command>
+    <inputs>
         <param name="input" type="data" format="tiff,png" label="Input image" />
         <param name="th_method" type="select" label="Thresholding method">
           <option value="otsu" selected="True">Otsu</option>