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annotate histogram_equalization.xml @ 1:77f7159d775a draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author imgteam
date Mon, 13 Nov 2023 22:10:25 +0000
parents 70316d792fc9
children 3f3783846dc0
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77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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1 <tool id="ip_histogram_equalization" name="Perform histogram equalization" version="0.0.1-2">
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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2 <description>with scikit-image</description>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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3 <edam_operations>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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4 <edam_operation>operation_3443</edam_operation>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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5 </edam_operations>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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6 <xrefs>
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7 <xref type="bio.tools">galaxy_image_analysis</xref>
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8 </xrefs>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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9 <requirements>
0
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10 <requirement type="package" version="0.14.2">scikit-image</requirement>
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11 <requirement type="package" version="1.15.4">numpy</requirement>
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12 <requirement type="package" version="5.3.0">pillow</requirement>
70316d792fc9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_histogram_equalization/ commit 767d7fec860d01468701c4e6dc270a7f1c74d53c
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13 <requirement type="package" version="0.15.1">tifffile</requirement>
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77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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14 </requirements>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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15 <command detect_errors="aggressive">
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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16 <![CDATA[
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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17 python '$__tool_directory__/histogram_equalization.py' '$input' '$output' $h_type
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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18 ]]>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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19 </command>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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20 <inputs>
0
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21 <param name="input" type="data" format="tiff" label="Source file" />
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22 <param name="h_type" type="select" label="Histogram Equalization Algorithm">
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23 <option value="default">Stretching</option>
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24 <option value="clahe" selected="True">CLAHE</option>
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25 </param>
70316d792fc9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_histogram_equalization/ commit 767d7fec860d01468701c4e6dc270a7f1c74d53c
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26 </inputs>
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27 <outputs>
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28 <data format="tiff" name="output" />
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29 </outputs>
70316d792fc9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_histogram_equalization/ commit 767d7fec860d01468701c4e6dc270a7f1c74d53c
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30 <tests>
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31 <test>
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32 <param name="input" value="sample.tif"/>
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33 <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/>
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34 <param name="h_type" value="default"/>
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35 </test>
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36 </tests>
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37 <help>
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38 Applies histogram equalization to an image.
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39 </help>
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40 <citations>
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41 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
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42 </citations>
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43 </tool>