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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:30:00 -0500
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1 <tool id="ip_anisotropic_diffusion" name="Anisotropic Diffusion" version="0.1">
2 <description>Edge-preserving, Anisotropic diffusion</description>
3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="0.3.0">medpy</requirement>
6 <requirement type="package" version="1.15.4">numpy</requirement>
7 </requirements>
8 <command>
9 <![CDATA[
10 python '$__tool_directory__/anisotropic_diffusion.py' '$input' '$output' '$niter' '$kappa' '$gamma' '$eqoption'
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="tiff" label="Image file"/>
15 <param label="Number of iterations" name="niter" optional="true" type="integer" value="50"/>
16 <param label="Conduction coefficient" name="kappa" optional="true" type="integer" value="50"/>
17 <param label="Speed of diffusion" name="gamma" optional="true" type="float" value="0.1"/>
18 <param name="eqoption" type="select" label="Diffusion Feature" help="Perona Malik diffusion equation">
19 <option value="1" selected="True">Favour high contrast edges</option>
20 <option value="2">Favour wide regions</option>
21 </param>
22 </inputs>
23 <outputs>
24 <data format="tiff" name="output"/>
25 </outputs>
26 <tests>
27 <test>
28 <param name="input" value="galaxyIcon_noText.tif" />
29 <param name="niter" value="100" />
30 <param name="kappa" value="50" />
31 <param name="gamma" value="0.1" />
32 <param name="eqoption" value="1" />
33 <output name="output" file="res.tif" ftype="tiff" compare="sim_size"/>
34 </test>
35 </tests>
36 <help>
37 **What it does**
38
39 Edge-preserving, Anisotropic image diffusion
40 </help>
41 <citations>
42 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
43 </citations>
44 </tool>