Mercurial > repos > imgteam > anisotropic_diffusion
view anisotropic_diffusion.xml @ 0:d13e26f576bc draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
---|---|
date | Sat, 09 Feb 2019 14:30:00 -0500 |
parents | |
children | 17d3cfba9b5a |
line wrap: on
line source
<tool id="ip_anisotropic_diffusion" name="Anisotropic Diffusion" version="0.1"> <description>Edge-preserving, Anisotropic diffusion</description> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="0.3.0">medpy</requirement> <requirement type="package" version="1.15.4">numpy</requirement> </requirements> <command> <![CDATA[ python '$__tool_directory__/anisotropic_diffusion.py' '$input' '$output' '$niter' '$kappa' '$gamma' '$eqoption' ]]> </command> <inputs> <param name="input" type="data" format="tiff" label="Image file"/> <param label="Number of iterations" name="niter" optional="true" type="integer" value="50"/> <param label="Conduction coefficient" name="kappa" optional="true" type="integer" value="50"/> <param label="Speed of diffusion" name="gamma" optional="true" type="float" value="0.1"/> <param name="eqoption" type="select" label="Diffusion Feature" help="Perona Malik diffusion equation"> <option value="1" selected="True">Favour high contrast edges</option> <option value="2">Favour wide regions</option> </param> </inputs> <outputs> <data format="tiff" name="output"/> </outputs> <tests> <test> <param name="input" value="galaxyIcon_noText.tif" /> <param name="niter" value="100" /> <param name="kappa" value="50" /> <param name="gamma" value="0.1" /> <param name="eqoption" value="1" /> <output name="output" file="res.tif" ftype="tiff" compare="sim_size"/> </test> </tests> <help> **What it does** Edge-preserving, Anisotropic image diffusion </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>