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annotate binaryimage2points.xml @ 0:cb1eaebdb4c4 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:31:13 -0500
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children f38f42d55813
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cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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1 <tool id="ip_binaryimage_to_points" name="Binary To Points" version="0.1">
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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2 <description>Converts Binary Image to Points</description>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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3 <requirements>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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4 <requirement type="package" version="1.15.4">numpy</requirement><!--https://github.com/numpy/numpy/pull/432 -->
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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5 <requirement type="package" version="0.14.2">scikit-image</requirement>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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6 <requirement type="package" version="0.23.4">pandas</requirement>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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7 </requirements>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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8 <command>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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9 <![CDATA[
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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10 python '$__tool_directory__/binaryimage2points.py' '$input' '$output'
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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11 ]]>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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12 </command>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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13 <inputs>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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14 <param name="input" type="data" format="tiff" label="Binary Image File"/>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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15 </inputs>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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16 <outputs>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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17 <data format="tabular" name="output"/>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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18 </outputs>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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19 <tests>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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20 <test>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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21 <param name="input" value="galaxyIcon_noText.tif" />
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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22 <output name="output" value="points.tsv" ftype="tabular" />
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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23 </test>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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24 </tests>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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25 <help>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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26 **What it does**
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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27
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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28 This tool converts an image to points.</help>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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29 <citations>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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30 <citation type="doi">10.7717/peerj.453</citation>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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31 </citations>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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32 </tool>