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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/bioformats2raw commit c045f067a57e8308308cf6329060c7ccd3fc372f
author imgteam
date Thu, 04 Apr 2024 15:25:16 +0000
parents 1b3e7d53cec6
children
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2:1b3e7d53cec6 3:94fe1169328c
1 <tool id="bf2raw" name="Convert to OME-Zarr" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="bf2raw" name="Convert to OME-Zarr" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>with Bioformats</description> 2 <description>with Bioformats</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.7.0</token> 4 <import>creators.xml</import>
5 <token name="@VERSION_SUFFIX@">2</token> 5 <token name="@TOOL_VERSION@">0.7.0</token>
6 <token name="@VERSION_SUFFIX@">3</token>
6 </macros> 7 </macros>
8 <creator>
9 <expand macro="creators/bugraoezdemir"/>
10 </creator>
7 <edam_operations> 11 <edam_operations>
8 <edam_operation>operation_3443</edam_operation> 12 <edam_operation>operation_3443</edam_operation>
9 </edam_operations> 13 </edam_operations>
10 <requirements> 14 <requirements>
11 <container type="docker">quay.io/biocontainers/mulled-v2-ea5a9ffc5f22f92a78f0cd24aac43eb503c0e523:4c010c399f61cde74da64343581999ada3e11e24-0</container> 15 <container type="docker">quay.io/biocontainers/mulled-v2-ea5a9ffc5f22f92a78f0cd24aac43eb503c0e523:4c010c399f61cde74da64343581999ada3e11e24-0</container>
117 <extra_files type="file" name="camera.ome.zarr/.zattrs" value="camera.ome.zarr/.zattrs" /> 121 <extra_files type="file" name="camera.ome.zarr/.zattrs" value="camera.ome.zarr/.zattrs" />
118 </output> 122 </output>
119 </test> 123 </test>
120 </tests> 124 </tests>
121 <help> 125 <help>
122 **What it does**
123 126
124 Bioformats-based tool that converts a wide range of image file formats to the cloud-optimised format OME-Zarr following the `OME-NGFF`_ specification. 127 **Converts images to OME-Zarr.**
125 128
126 .. _OME-NGFF: https://ngff.openmicroscopy.org/latest 129 Bioformats-based tool that converts a wide range of image file formats to the cloud-optimised format
130 OME-Zarr following the `OME-NGFF`_ specification.
131
132 .. _OME-NGFF: https://ngff.openmicroscopy.org/latest
133
127 </help> 134 </help>
128 <citations> 135 <citations>
129 <citation type="doi">https://doi.org/10.5281/zenodo.5548102 </citation> 136 <citation type="doi">https://doi.org/10.5281/zenodo.5548102 </citation>
130 </citations> 137 </citations>
131 </tool> 138 </tool>