Mercurial > repos > imgteam > bioformats2raw

changeset 3:94fe1169328c draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/bioformats2raw commit c045f067a57e8308308cf6329060c7ccd3fc372f
author imgteam
date Thu, 04 Apr 2024 15:25:16 +0000
parents 1b3e7d53cec6
children
files bf2raw.xml creators.xml
diffstat 2 files changed, 35 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/bf2raw.xml	Mon Feb 26 20:01:43 2024 +0000
+++ b/bf2raw.xml	Thu Apr 04 15:25:16 2024 +0000
@@ -1,9 +1,13 @@
 <tool id="bf2raw" name="Convert to OME-Zarr" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>with Bioformats</description>
     <macros>
-         <token name="@TOOL_VERSION@">0.7.0</token>
-         <token name="@VERSION_SUFFIX@">2</token>
+        <import>creators.xml</import>
+        <token name="@TOOL_VERSION@">0.7.0</token>
+        <token name="@VERSION_SUFFIX@">3</token>
     </macros>
+    <creator>
+        <expand macro="creators/bugraoezdemir"/>
+    </creator>
     <edam_operations>
         <edam_operation>operation_3443</edam_operation>
     </edam_operations>
@@ -119,11 +123,14 @@
         </test>
     </tests>
     <help>
-**What it does**
+
+        **Converts images to OME-Zarr.**
 
-Bioformats-based tool that converts a wide range of image file formats to the cloud-optimised format OME-Zarr following the `OME-NGFF`_ specification.
+        Bioformats-based tool that converts a wide range of image file formats to the cloud-optimised format
+        OME-Zarr following the `OME-NGFF`_ specification.
 
-.. _OME-NGFF: https://ngff.openmicroscopy.org/latest
+        .. _OME-NGFF: https://ngff.openmicroscopy.org/latest
+
     </help>
     <citations>
         <citation type="doi">https://doi.org/10.5281/zenodo.5548102 </citation>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/creators.xml	Thu Apr 04 15:25:16 2024 +0000
@@ -0,0 +1,23 @@
+<macros>
+
+    <xml name="creators/bmcv">
+        <organization name="Biomedical Computer Vision Group, Heidelberg Universtiy" alternateName="BMCV" url="http://www.bioquant.uni-heidelberg.de/research/groups/biomedical_computer_vision.html" />
+        <yield />
+    </xml>
+
+    <xml name="creators/alliecreason">
+        <person givenName="Allison" familyName="Creason"/>
+        <yield/>
+    </xml>
+
+    <xml name="creators/bugraoezdemir">
+        <person givenName="Bugra" familyName="Oezdemir"/>
+        <yield/>
+    </xml>
+
+    <xml name="creators/thawn">
+        <person givenName="Till" familyName="Korten"/>
+        <yield/>
+    </xml>
+    
+</macros>