Mercurial > repos > imgteam > colorize_labels

changeset 3:2d1de6e7b113 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/colorize_labels commit c86a1b93cb7732f7331a981d13465653cc1a2790
author imgteam
date Wed, 24 Apr 2024 08:12:15 +0000
parents 3aa2d054848a
children
files colorize_labels.py colorize_labels.xml
diffstat 2 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/colorize_labels.py	Thu Apr 04 15:25:22 2024 +0000
+++ b/colorize_labels.py	Wed Apr 24 08:12:15 2024 +0000
@@ -1,5 +1,6 @@
 import argparse
 
+import giatools.io
 import matplotlib.colors as mpl
 import networkx as nx
 import numpy as np
@@ -55,7 +56,7 @@
     args = parser.parse_args()
 
     # Load image and normalize
-    im = skimage.io.imread(args.input)
+    im = giatools.io.imread(args.input)
     im = np.squeeze(im)
     assert im.ndim == 2
 
--- a/colorize_labels.xml	Thu Apr 04 15:25:22 2024 +0000
+++ b/colorize_labels.xml	Wed Apr 24 08:12:15 2024 +0000
@@ -4,7 +4,7 @@
         <import>creators.xml</import>
         <import>tests.xml</import>
         <token name="@TOOL_VERSION@">3.2.1</token>
-        <token name="@VERSION_SUFFIX@">1</token>
+        <token name="@VERSION_SUFFIX@">2</token>
     </macros>
     <creator>
         <expand macro="creators/bmcv" />
@@ -16,6 +16,7 @@
         <requirement type="package" version="@TOOL_VERSION@">networkx</requirement>
         <requirement type="package" version="1.22">numpy</requirement>
         <requirement type="package" version="0.18.1">scikit-image</requirement>
+        <requirement type="package" version="0.1">giatools</requirement>
     </requirements>
     <command><![CDATA[